PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G233000.4.p
Common NamePRUPE_ppa004136mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 328aa    MW: 36467.9 Da    PI: 6.9304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G233000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4002.4e-122132745374
                GRAS  45 fteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasR 135
                         ++e+L arla+s+s +y+al+++e +   s+e l+++++++e++P++kf+++ aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+R
  Prupe.4G233000.4.p   1 MLEGLVARLASSGSAIYAALRCKEPA---SAELLSYMHILYEICPYFKFGYMSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAAR 88 
                         689**********************9...9************************************************************* PP

                GRAS 136 pegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                         p+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +  + ++++le+++v+pgEa+aVn++++lh+++desvs +++r
  Prupe.4G233000.4.p  89 PGGPPQIRITGIDDSTSAyaRGGGLGLVGQRLSRLAESCKVPFEFHA-AGISASEVQLENIEVRPGEAIAVNFAFMLHHMPDESVSCQNHR 178
                         **************998899999************************.7889*************************************** PP

                GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                         d++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+++ lpre++eri+vE+++l+reivn++aceg er+er e l+kW
  Prupe.4G233000.4.p 179 DRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLSYFRAVFDSIDVALPREHKERINVEQHCLAREIVNIIACEGMERVERYELLSKW 269
                         ******************************************************************************************* PP

                GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW++r Lv+ +aWr
  Prupe.4G233000.4.p 270 KSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGWMNRVLVASCAWR 327
                         ******************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.8211308IPR005202Transcription factor GRAS
PfamPF035148.2E-1201327IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLEGLVARLA SSGSAIYAAL RCKEPASAEL LSYMHILYEI CPYFKFGYMS ANGAIAEAMK  60
DESRVHIIDF QVAQGSQWIT LIQALAARPG GPPQIRITGI DDSTSAYARG GGLGLVGQRL  120
SRLAESCKVP FEFHAAGISA SEVQLENIEV RPGEAIAVNF AFMLHHMPDE SVSCQNHRDR  180
LLRLVKSLSP KVVTLVEQES NTNTAPFLPR FAETLSYFRA VFDSIDVALP REHKERINVE  240
QHCLAREIVN IIACEGMERV ERYELLSKWK SRFIMAGFSP YPLSSLVNGT IKTLLQSYSE  300
KYTLEERDGA LYLGWMNRVL VASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-61332749375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G233000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418690.10.0scarecrow-like transcription factor PAT1 isoform X2
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A251PPU70.0A0A251PPU7_PRUPE; Uncharacterized protein
TrEMBLA0A251PPW30.0A0A251PPW3_PRUPE; Uncharacterized protein
STRINGXP_008227106.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]