PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G233000.3.p
Common NamePRUPE_ppa004136mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 420aa    MW: 46671.6 Da    PI: 5.0973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G233000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4441e-135494191374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e+L +cA+a++++d++ ++ l+++l++++s +g+p+qRl ay++e+L arla+s+s +y+al+++e +   s+e l+++++++e++P++
  Prupe.4G233000.3.p  49 LKEVLCACAKALANSDMSTTELLMSNLRQMVSVSGEPIQRLGAYMLEGLVARLASSGSAIYAALRCKEPA---SAELLSYMHILYEICPYF 136
                         5789*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++
  Prupe.4G233000.3.p 137 KFGYMSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAARPGGPPQIRITGIDDSTSAyaRGGGLGLVGQRLSRLAESCKVPFEFHA 227
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +  + ++++le+++v+pgEa+aVn++++lh+++desvs +++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+
  Prupe.4G233000.3.p 228 -AGISASEVQLENIEVRPGEAIAVNFAFMLHHMPDESVSCQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLSYFRAVFDSI 317
                         .7889************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ lpre++eri+vE+++l+reivn++aceg er+er e l+kW++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW
  Prupe.4G233000.3.p 318 DVALPREHKERINVEQHCLAREIVNIIACEGMERVERYELLSKWKSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGW 407
                         **************************************************************************65.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aWr
  Prupe.4G233000.3.p 408 MNRVLVASCAWR 419
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.74923400IPR005202Transcription factor GRAS
PfamPF035143.5E-13349419IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MRELESVLLG NDLDAFDMYA ITDELGPNQL SSEAENWEQM MEMISRGDLK EVLCACAKAL  60
ANSDMSTTEL LMSNLRQMVS VSGEPIQRLG AYMLEGLVAR LASSGSAIYA ALRCKEPASA  120
ELLSYMHILY EICPYFKFGY MSANGAIAEA MKDESRVHII DFQVAQGSQW ITLIQALAAR  180
PGGPPQIRIT GIDDSTSAYA RGGGLGLVGQ RLSRLAESCK VPFEFHAAGI SASEVQLENI  240
EVRPGEAIAV NFAFMLHHMP DESVSCQNHR DRLLRLVKSL SPKVVTLVEQ ESNTNTAPFL  300
PRFAETLSYF RAVFDSIDVA LPREHKERIN VEQHCLAREI VNIIACEGME RVERYELLSK  360
WKSRFIMAGF SPYPLSSLVN GTIKTLLQSY SEKYTLEERD GALYLGWMNR VLVASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-66514196375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G233000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418688.10.0scarecrow-like protein 21 isoform X1
RefseqXP_020418690.10.0scarecrow-like transcription factor PAT1 isoform X2
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A251PPW30.0A0A251PPW3_PRUPE; Uncharacterized protein
TrEMBLA0A251PQ120.0A0A251PQ12_PRUPE; Uncharacterized protein
TrEMBLA0A251PRA40.0A0A251PRA4_PRUPE; Uncharacterized protein
STRINGXP_008227106.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]