PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G233000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 571aa    MW: 63145.4 Da    PI: 5.1741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G233000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.62.8e-1352005701374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e+L +cA+a++++d++ ++ l+++l++++s +g+p+qRl ay++e+L arla+s+s +y+al+++e +   s+e l+++++++e++P++
  Prupe.4G233000.1.p 200 LKEVLCACAKALANSDMSTTELLMSNLRQMVSVSGEPIQRLGAYMLEGLVARLASSGSAIYAALRCKEPA---SAELLSYMHILYEICPYF 287
                         5789*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++
  Prupe.4G233000.1.p 288 KFGYMSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAARPGGPPQIRITGIDDSTSAyaRGGGLGLVGQRLSRLAESCKVPFEFHA 378
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +  + ++++le+++v+pgEa+aVn++++lh+++desvs +++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+
  Prupe.4G233000.1.p 379 -AGISASEVQLENIEVRPGEAIAVNFAFMLHHMPDESVSCQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLSYFRAVFDSI 468
                         .7889************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ lpre++eri+vE+++l+reivn++aceg er+er e l+kW++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW
  Prupe.4G233000.1.p 469 DVALPREHKERINVEQHCLAREIVNIIACEGMERVERYELLSKWKSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGW 558
                         **************************************************************************65.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aWr
  Prupe.4G233000.1.p 559 MNRVLVASCAWR 570
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.749174551IPR005202Transcription factor GRAS
PfamPF035149.7E-133200570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MNSEEAKEKT KAEGCNNHIP FICQKPNWVF TKFLESQKHI IPNVSHGCGE QPVEEPESYS  60
WPPIPSVDHQ ASSDEVIQGT QLSVQHLAQY CTHESSSGTS TYHPVHSSPS SIGFSANGSP  120
TSHPDLQNYQ SCGSPVNQSC LSNDTDDLGH KMRELESVLL GNDLDAFDMY AITDELGPNQ  180
LSSEAENWEQ MMEMISRGDL KEVLCACAKA LANSDMSTTE LLMSNLRQMV SVSGEPIQRL  240
GAYMLEGLVA RLASSGSAIY AALRCKEPAS AELLSYMHIL YEICPYFKFG YMSANGAIAE  300
AMKDESRVHI IDFQVAQGSQ WITLIQALAA RPGGPPQIRI TGIDDSTSAY ARGGGLGLVG  360
QRLSRLAESC KVPFEFHAAG ISASEVQLEN IEVRPGEAIA VNFAFMLHHM PDESVSCQNH  420
RDRLLRLVKS LSPKVVTLVE QESNTNTAPF LPRFAETLSY FRAVFDSIDV ALPREHKERI  480
NVEQHCLARE IVNIIACEGM ERVERYELLS KWKSRFIMAG FSPYPLSSLV NGTIKTLLQS  540
YSEKYTLEER DGALYLGWMN RVLVASCAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-642045708375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G233000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815802.10.0scarecrow-like protein 21 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A251PRA40.0A0A251PRA4_PRUPE; Uncharacterized protein
STRINGXP_008227106.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]