PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G222300.1.p | ||||||||
Common Name | PRUPE_ppa010893mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25022.8 Da PI: 7.8442 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.8e-20 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+ l+g Prupe.4G222300.1.p 31 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAAHILRG 80 69*******.**********883....5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.9E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 31 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-12 | 31 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 31 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 31 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.11E-18 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 9.0E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-11 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRRGRGAAAR AAAATPAEPA GSRPNIANEV RYRGVRKRPW GRFAAEIRDP WKKTRVWLGT 60 FDSAEDAARA YDAAAHILRG PKAKTNFPIS CAYPPPLYNN PTDQAIETKL FGSGYGFQDN 120 PVVDPQRPTS SSLSSTVESF SGPRPPPQST TIAAESSRRK RQPRTPPVVP EDCHSDCDSS 180 SSVVEDDGDF AASSSFRKTL LPFDLNFPPL DEEGELGGGE GQDLRCTALC L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 21 | 88 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13186 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G222300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT223017 | 0.0 | KT223017.1 Prunus persica ethylene responsive factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211978.1 | 1e-168 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 1e-53 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | M5WH87 | 1e-167 | M5WH87_PRUPE; Ethylene responsive factor 7 | ||||
STRING | EMJ13177 | 1e-168 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 8e-28 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G222300.1.p |
Entrez Gene | 18780279 |
Publications ? help Back to Top | |||
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