PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G215600.1.p | ||||||||
Common Name | PRUPE_ppa019943mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 542aa MW: 59949.6 Da PI: 7.185 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++v++ G g+W+++ r g++R++k+c++rw ++l Prupe.4G215600.1.p 39 KGPWTAAEDQILMEYVRKRGEGNWNAVQRNSGLNRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.3e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +++eE+ ++++++ ++G++ W++ a+ ++ gRt++++k++w++ Prupe.4G215600.1.p 92 KGVFSPEEERRILELHSKYGNK-WARMASQLP-GRTDNEIKNYWNT 135 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.262 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.24E-30 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-9 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 25.477 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-16 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.17E-12 | 95 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MTTNNGSIWE LHREGMLPPE SSDGGGGGHV VEGSDGLKKG PWTAAEDQIL MEYVRKRGEG 60 NWNAVQRNSG LNRCGKSCRL RWANHLRPNL KKGVFSPEEE RRILELHSKY GNKWARMASQ 120 LPGRTDNEIK NYWNTRIKRR QRQCLPLYPQ DIKQSHSQAT SLTIPSLTPL TTTIQNLFQP 180 ITNGSTPTFS FQTQSPTQSH HLPPLSPPPL SLSPLSSPHQ TQPTSLTSFP AFDPINTITS 240 SFSSSSTPSF TFHRPAPILG APLCHKRYRD SIVFSQPRSP NLKRKMFRTR SMPDIASFQL 300 TGSNSMPAIA SLTRTYSMSD NPSFEFPMTF DHSFPPLPRS HFDFSDNFLS SAGSVYSVQS 360 ELPSNQVSQT QLEISIDNNL SSAAGATLAA AADETHSRSG LLDDLLREAD ALEACGGGNN 420 SRTTNGILGS FEEKYVLDGY DQWLQSTSSV HGHLNSMHKD FSKLFSSIPS SESVSDWYSD 480 SGEVSNAHSS GITDVSLDMQ QMASMFPTDA TAEHARASSF REEEQLSYHR DMNKVLMTQY 540 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 33 | 140 | 1 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G215600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417889.1 | 0.0 | transcription factor MYB28 | ||||
TrEMBL | A0A251PSA4 | 0.0 | A0A251PSA4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13980 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-65 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G215600.1.p |
Entrez Gene | 18779726 |