PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G215500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 451aa MW: 49192.9 Da PI: 9.7553 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++v+++G g+W+++ r g++R++k+c++rw ++l Prupe.4G215500.2.p 45 KGPWTAVEDQILMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 92 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 98 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ +E+ l++++++++G++ W++ a+ ++ gRt++++k++w++ Prupe.4G215500.2.p 98 KGAFSHDEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 141 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.741 | 40 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 40 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.37E-30 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 45 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 24.924 | 93 | 147 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 96 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 98 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-11 | 100 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MMTPSSSSNN NSGLLQQNEG RSPQELSGGG GGGGDVVEGS KGLKKGPWTA VEDQILMEYV 60 RKHGEGNWNA VQRNSGLNRC GKSCRLRWAN HLRPNLKKGA FSHDEERLIL ELHAKYGNKW 120 ARMASQLPGR TDNEIKNYWN TRVKRRQRQG LPLYPNDIKQ PQQSHSHSRS LPTTTIQNPF 180 QSTNNCTTPT FSFQIQSPIQ AHHMHSLSPT PPSLSPLSSP HHPKSTTLTS LPLFDPSNPP 240 TTSSFSSFTF HRPAPILGAP VRYKRYRDSV GFSPPVSPTP QRSASILRAN SMPDIASSHL 300 TITNSIPEIA SFQFPRTLNP SLPPLPSSRT QFEYSESFLS STGSVYSVKS ELPSSQVSQT 360 QSEVTIDTKV SSTAAAAAVS ASQSHSSNGL LEDLLQEAEV LACGGGNPSK RANGLFSSFE 420 EKHVLDNYTR WLQSTSSLEG SLLGEVLVFC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-31 | 39 | 146 | 1 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G215500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417031.1 | 0.0 | transcription factor MYB28 | ||||
TrEMBL | A0A251PP31 | 0.0 | A0A251PP31_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14175 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 9e-70 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G215500.2.p |