PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G206800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 96aa MW: 10800.5 Da PI: 10.7341 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.4e-13 | 15 | 94 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffk+l ++++ l ++ f+++++g + ++ +l+ +sg+ v+l + + ++ +++kG ++Fvk+++L++g f+vF++dg+ Prupe.4G206800.1.p 15 FFKIL--LGDFSKH-LHISPVFIKNFNGG--SLRKCSLRGPSGKGRAVEL--EERENGLFFSKGLQGFVKDHHLEVGNFLVFRYDGE 94 66666..6677777.99999999777555..45589**************..*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.94E-14 | 10 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-14 | 11 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.91E-10 | 14 | 95 | No hit | No description |
SMART | SM01019 | 0.006 | 15 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-11 | 15 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MARKLTKRSV KKESFFKILL GDFSKHLHIS PVFIKNFNGG SLRKCSLRGP SGKGRAVELE 60 ERENGLFFSK GLQGFVKDHH LEVGNFLVFR YDGES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G206800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021801201.1 | 3e-57 | B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A251PNN2 | 7e-61 | A0A251PNN2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15539 | 4e-56 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G206800.1.p |