PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G206300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 298aa    MW: 33572.9 Da    PI: 10.2996
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G206300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.12.5e-21221041099
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + s+rl++p kf+++++   + + +  l  +sg +W+v+l  + + ++ ++++GW++Fvk+++L++gDf+vFk+dg+s+f  +v+++++
  Prupe.4G206300.1.p  22 DF-SQRLRIPPKFVKNFNVR-PLH-KCALSGPSGIRWTVEL--EERENGLFFQDGWQGFVKDHHLEDGDFLVFKYDGESKF--KVTIYDR 104
                         44.457********666544.454.899*************..**********************************9999..8988886 PP
2B346.85.4e-152012821598
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++++pk+ a + g+++++   ++++d++grsW vkl++  + +s+r+++++G  +F++an++  gD+ +F++++ s +   +++fr
  Prupe.4G206300.1.p 201 CVTIPKEVAVTEGLVSKK--SMMIQDSTGRSWPVKLRVrgKLSSCRVYMSTGLLNFCNANQIIPGDTAIFEFVKPSLA--QIHIFR 282
                         489******999999555..699*************9966667888*************************9875544..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-2411107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2411107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.50812105IPR003340B3 DNA binding domain
CDDcd100173.48E-2214103No hitNo description
SMARTSM010197.0E-1815105IPR003340B3 DNA binding domain
PfamPF023624.6E-1916104IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-16183284IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-14184282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.307187284IPR003340B3 DNA binding domain
SMARTSM010191.7E-7190284IPR003340B3 DNA binding domain
CDDcd100174.20E-8199282No hitNo description
PfamPF023621.4E-12201282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MARKLVKPSL NKQSFFKILL GDFSQRLRIP PKFVKNFNVR PLHKCALSGP SGIRWTVELE  60
ERENGLFFQD GWQGFVKDHH LEDGDFLVFK YDGESKFKVT IYDRTACEKN VKVAERSGCP  120
VSLANKGKAQ VKEEIVDRET RNYNKNCQNK AIVSGRRSGN YVIPGRRPAN DHVGATSTEP  180
VLFKPKYSCF MVTFTRKLRY CVTIPKEVAV TEGLVSKKSM MIQDSTGRSW PVKLRVRGKL  240
SSCRVYMSTG LLNFCNANQI IPGDTAIFEF VKPSLAQIHI FRVGGNSVVL AEPDVKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G206300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418156.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A251PNJ80.0A0A251PNJ8_PRUPE; Uncharacterized protein
STRINGXP_008226826.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-25B3 family protein