PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G190000.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 235aa    MW: 25772.1 Da    PI: 6.7645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G190000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.4e-18113210194
                         EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k lt sd++ + +rlv+pkk+ae+h  ++++++++ ++++d +gr W+++++ +++s++   yvl+ G k++   n+ ++gD+v+F+++
  Prupe.4G190000.4.p 113 FEKSLTASDTFLNtARLVIPKKCAEAHfpKISETQGFPIVIQDYTGRDWKFQYRCWQNSNSkkmYVLE-GLKDYMILNQWQVGDTVTFHRT 202
                         899******998779**************99999*******************885555555548888.********************65 PP

                         SSSEE..EE CS
                  B3  86 grsefelvv 94 
                         + +e++l +
  Prupe.4G190000.4.p 203 E-QEGKLII 210
                         4.6666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-23105215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-16110206IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-19111210No hitNo description
SMARTSM010193.1E-9113215IPR003340B3 DNA binding domain
PfamPF023621.6E-15113211IPR003340B3 DNA binding domain
PROSITE profilePS508639.897114216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSCHTYTELD YGGVGCSKCL LRSKKSMESA ANEGTYLTTL SDSDTHSVVS NEIIAECCSP  60
GSSKGKASAL IGENSNVDSS GHTGCEQGVE SETPRVDAST QNHLSNIDAI PLFEKSLTAS  120
DTFLNTARLV IPKKCAEAHF PKISETQGFP IVIQDYTGRD WKFQYRCWQN SNSKKMYVLE  180
GLKDYMILNQ WQVGDTVTFH RTEQEGKLII GTKKMPASIA SIQALKEKIW KLLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A2e-351062142108B3 domain-containing transcription repressor VAL1
6fas_B2e-351062142108B3 domain-containing transcription repressor VAL1
6j9a_A2e-3510621417123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G190000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418200.11e-174B3 domain-containing transcription factor VAL3-like
SwissprotQ5CCK46e-34VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A251PMV41e-175A0A251PMV4_PRUPE; Uncharacterized protein
STRINGXP_008226707.11e-162(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-36HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]