PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G190000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 25772.1 Da PI: 6.7645 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.4e-18 | 113 | 210 | 1 | 94 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 f+k lt sd++ + +rlv+pkk+ae+h ++++++++ ++++d +gr W+++++ +++s++ yvl+ G k++ n+ ++gD+v+F+++ Prupe.4G190000.2.p 113 FEKSLTASDTFLNtARLVIPKKCAEAHfpKISETQGFPIVIQDYTGRDWKFQYRCWQNSNSkkmYVLE-GLKDYMILNQWQVGDTVTFHRT 202 899******998779**************99999*******************885555555548888.********************65 PP SSSEE..EE CS B3 86 grsefelvv 94 + +e++l + Prupe.4G190000.2.p 203 E-QEGKLII 210 4.6666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.1E-23 | 105 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.4E-16 | 110 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.51E-19 | 111 | 210 | No hit | No description |
SMART | SM01019 | 3.1E-9 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 113 | 211 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.897 | 114 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSCHTYTELD YGGVGCSKCL LRSKKSMESA ANEGTYLTTL SDSDTHSVVS NEIIAECCSP 60 GSSKGKASAL IGENSNVDSS GHTGCEQGVE SETPRVDAST QNHLSNIDAI PLFEKSLTAS 120 DTFLNTARLV IPKKCAEAHF PKISETQGFP IVIQDYTGRD WKFQYRCWQN SNSKKMYVLE 180 GLKDYMILNQ WQVGDTVTFH RTEQEGKLII GTKKMPASIA SIQALKEKIW KLLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6fas_A | 2e-35 | 106 | 214 | 2 | 108 | B3 domain-containing transcription repressor VAL1 |
6fas_B | 2e-35 | 106 | 214 | 2 | 108 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-35 | 106 | 214 | 17 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G190000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418200.1 | 1e-174 | B3 domain-containing transcription factor VAL3-like | ||||
Swissprot | Q5CCK4 | 6e-34 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A251PMV4 | 1e-175 | A0A251PMV4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226707.1 | 1e-162 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 2e-36 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G190000.2.p |
Publications ? help Back to Top | |||
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