PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G190000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 366aa MW: 40456.4 Da PI: 7.555 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.8 | 8.5e-18 | 244 | 341 | 1 | 94 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 f+k lt sd++ + +rlv+pkk+ae+h ++++++++ ++++d +gr W+++++ +++s++ yvl+ G k++ n+ ++gD+v+F+++ Prupe.4G190000.1.p 244 FEKSLTASDTFLNtARLVIPKKCAEAHfpKISETQGFPIVIQDYTGRDWKFQYRCWQNSNSkkmYVLE-GLKDYMILNQWQVGDTVTFHRT 333 899******998779**************99999*******************885555555548888.********************65 PP SSSEE..EE CS B3 86 grsefelvv 94 + +e++l + Prupe.4G190000.1.p 334 E-QEGKLII 341 4.6666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-22 | 236 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.5E-16 | 241 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.78E-18 | 242 | 341 | No hit | No description |
Pfam | PF02362 | 4.4E-15 | 244 | 342 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-9 | 244 | 346 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.897 | 245 | 347 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MALTHTRSLV YILDVLIFQH FLCPSLSRLL SLFSLSRLLS LFLSVSFALS FSLTLCVASM 60 ASMASEHCFF CKAEIAEFIT GWPLKDGSFA KLCGKCGYAY IHDQFCETFH AKSDGWRHCD 120 GCKKRLHCGC IMSCHTYTEL DYGGVGCSKC LLRSKKSMES AANEGTYLTT LSDSDTHSVV 180 SNEIIAECCS PGSSKGKASA LIGENSNVDS SGHTGCEQGV ESETPRVDAS TQNHLSNIDA 240 IPLFEKSLTA SDTFLNTARL VIPKKCAEAH FPKISETQGF PIVIQDYTGR DWKFQYRCWQ 300 NSNSKKMYVL EGLKDYMILN QWQVGDTVTF HRTEQEGKLI IGTKKMPASI ASIQALKEKI 360 WKLLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6fas_A | 7e-34 | 237 | 345 | 2 | 108 | B3 domain-containing transcription repressor VAL1 |
6fas_B | 7e-34 | 237 | 345 | 2 | 108 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 9e-34 | 237 | 345 | 17 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G190000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418200.1 | 0.0 | B3 domain-containing transcription factor VAL3-like | ||||
Swissprot | Q5CCK4 | 4e-32 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A251PMZ6 | 0.0 | A0A251PMZ6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226707.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15978 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-34 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G190000.1.p |
Publications ? help Back to Top | |||
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