PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G178400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29189.8 Da PI: 9.7952 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.1 | 2.8e-17 | 15 | 101 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkvl ++l+lp f+ +++g++++ + l+ ++g+ W+v l + + +++++++GW++F ++ Lk+g f+vF ++g +f Prupe.4G178400.1.p 15 FFKVL--LGDDFPRQLCLPPAFMVHYNGPSHC--KCALRGPTGKWWTVGL--EEREDGFYFREGWRRFLTDHSLKVGYFLVFDHQGGPKF- 98 66666..33444456***********999666..7***************..*******************************9887777. PP .EEE CS B3 92 lvvk 95 v+ Prupe.4G178400.1.p 99 -DVT 101 .444 PP | |||||||
2 | B3 | 48.2 | 1.9e-15 | 155 | 240 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + r+ +pk+ a + g++ ++ +++l+d++grsW+vkl+ + ++gr ++t+G +an++ gD++vF+l++rse v++fr+ Prupe.4G178400.1.p 155 QYRMNIPKELAVAEGLI--GKEKVMLKDPNGRSWNVKLRLdnkEHHGGRLLMTQGLVACWQANNISLGDTIVFELVKRSEM--EVHIFRT 240 5689*******999988..5569***************99544444555*************************9986555..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.61E-22 | 10 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-22 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.74E-19 | 13 | 103 | No hit | No description |
SMART | SM01019 | 3.4E-12 | 15 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 15 | 98 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 48 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 140 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-16 | 141 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.771 | 143 | 241 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.39E-13 | 145 | 239 | No hit | No description |
SMART | SM01019 | 1.8E-10 | 147 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 156 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MARKPTKPCP KLPSFFKVLL GDDFPRQLCL PPAFMVHYNG PSHCKCALRG PTGKWWTVGL 60 EEREDGFYFR EGWRRFLTDH SLKVGYFLVF DHQGGPKFDV TIYHPMGCDM RRSIGNSDKP 120 GKRPATAAAV EETSTGSIVF RSEHPCFIRI LGKNQYRMNI PKELAVAEGL IGKEKVMLKD 180 PNGRSWNVKL RLDNKEHHGG RLLMTQGLVA CWQANNISLG DTIVFELVKR SEMEVHIFRT 240 GAGGNMPSVV LDASSSFKH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G178400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008226604.1 | 1e-176 | PREDICTED: B3 domain-containing protein REM5-like | ||||
TrEMBL | A0A251PM68 | 0.0 | A0A251PM68_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226604.1 | 1e-176 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 1e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G178400.1.p |