PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G178300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 302aa    MW: 34207.2 Da    PI: 9.51
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G178300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1715104199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+l     ++++ l++p  f+++++g +    + +l+ +sg+   v+l  + + ++ +++kGW++Fvk+++L++g f+vF++dg+s+f 
  Prupe.4G178300.1.p  15 FFKIL--LGDFSKH-LRIPPAFIKNFNGGSL--GKCSLRGPSGKGRAVEL--EERENGLFFSKGWQGFVKDHHLEVGNFLVFRYDGESKF- 97 
                         67777..7778888.********88855533..379**************..**********************************9999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v+++++
  Prupe.4G178300.1.p  98 -KVTIYDR 104
                         .8988887 PP
2B353.54.2e-172012801495
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++++pkk a + g+++++   +tl+d++gr W vkl +  + + +r+ +t+GW e ++an++ +gD++vF+++++s    +++
  Prupe.4G178300.1.p 201 YCMMIPKKLAIAEGLNSAR--NVTLRDPNGRLWLVKLVIrpKSSCKRVEFTTGWGECCQANQISVGDTMVFEFVKQSAI--KLH 280
                         349*******999*99766..6***************8865666666*************************9876655..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2210107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-2211107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01212105IPR003340B3 DNA binding domain
CDDcd100171.04E-1813103No hitNo description
SMARTSM010194.6E-1615105IPR003340B3 DNA binding domain
PfamPF023621.1E-1515104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19183283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-19184283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464188285IPR003340B3 DNA binding domain
CDDcd100171.85E-15189282No hitNo description
SMARTSM010196.1E-14191285IPR003340B3 DNA binding domain
PfamPF023627.4E-15201281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MARKLMKRSV KKKSFFKILL GDFSKHLRIP PAFIKNFNGG SLGKCSLRGP SGKGRAVELE  60
ERENGLFFSK GWQGFVKDHH LEVGNFLVFR YDGESKFKVT IYDRSACEKD VEVAERGIGS  120
SDSIESKGNQ VRVKEEIIDL ETENYNEDYE NKTSIANRRN CNAMSGKKPT TDYVEETTSE  180
SISFKSDHRC FMETMKRHYR YCMMIPKKLA IAEGLNSARN VTLRDPNGRL WLVKLVIRPK  240
SSCKRVEFTT GWGECCQANQ ISVGDTMVFE FVKQSAIKLH IFGEVNGKRC PVVLDAPNGE  300
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212RKLMKRSVKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G178300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213970.20.0B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLA0A251PM710.0A0A251PM71_PRUPE; Uncharacterized protein
STRINGXP_008226603.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-21B3 family protein