PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G178200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 295aa    MW: 33259.3 Da    PI: 9.7134
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-1715102197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkvl     + ++ l+lp  f+e+ +g++  + +  l++++g+ W+v+l  + + +++++ +GW++Fv+++ L+ g f+vF +dg s+f 
  Prupe.4G178200.1.p  15 FFKVL--LGDFYQH-LRLPPVFIEKLDGQS-LP-KCALRSPNGKLWTVEL--EERENGFFFHDGWQGFVRDHCLEIGNFLVFDYDGGSKF- 97 
                         66666..6666666.9**********8873.44.89**************..*********************************98998. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                           v+++
  Prupe.4G178200.1.p  98 -DVTIY 102
                         .66665 PP
2B348.61.4e-151952721696
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         +++pk+ a + g++  ++kt++l d+ grsW vkl++ +++   + +tkGW + ++an++ +gD++vF++++ s   + +++
  Prupe.4G178200.1.p 195 VTIPKELAIAEGLV--RKKTVKLHDPAGRSWIVKLRVHRSPYLrFEMTKGWAKCCRANQISQGDTIVFEFVKPSV--MQIHI 272
                         589*****999999..6779***************6644443358999*********************876433..35555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-229107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92912105IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-2213111IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-1914102No hitNo description
PfamPF023621.4E-1415100IPR003340B3 DNA binding domain
SMARTSM010193.0E-1415105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-18177274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18177274IPR015300DNA-binding pseudobarrel domain
CDDcd100179.63E-15183274No hitNo description
SMARTSM010191.7E-11184276IPR003340B3 DNA binding domain
PfamPF023627.8E-13195274IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252195276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MARKLSKPSL KKQSFFKVLL GDFYQHLRLP PVFIEKLDGQ SLPKCALRSP NGKLWTVELE  60
ERENGFFFHD GWQGFVRDHC LEIGNFLVFD YDGGSKFDVT IYEPTGCEKD VEAAKRRSGN  120
PVSSVKDEIV DIETENYNKE SKSQTINAER TSRKYIMSGK RPANDSVEET STGSILFKSE  180
NSCFIKILTK ILYPVTIPKE LAIAEGLVRK KTVKLHDPAG RSWIVKLRVH RSPYLRFEMT  240
KGWAKCCRAN QISQGDTIVF EFVKPSVMQI HIYRGGRVGG SGCSVVLVNP GLKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212635.20.0putative B3 domain-containing protein At5g66980 isoform X2
TrEMBLA0A251PM900.0A0A251PM90_PRUPE; Uncharacterized protein
STRINGXP_008226602.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-27B3 family protein