PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G178100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 297aa    MW: 33830.9 Da    PI: 9.8801
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G178100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-19241031499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +rl++p kf+e+++g+  + ++  l+ +s + W+vkl  + + ++ ++++GW++Fvk++ L++gD +vF+++g+s+f  +vk++++
  Prupe.4G178100.2.p  24 QRLRIPPKFIENFNGQ--SLRKCALRGPSRQWWDVKL--EERENSLFFRDGWQGFVKDHVLEVGDLLVFSYNGKSKF--KVKIYDR 103
                         68********999888..4568***************..********************************998999..9999987 PP
2B337.35e-121992771598
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         r+++p+k a + g+   +   ++l+d++grsW v+l+   + +r  ++ GW e  kan++  gD+++F+l++  ++ + +++fr
  Prupe.4G178100.2.p 199 RVTIPNKLAVAEGLR--GRDAVILQDPTGRSWLVELR-VECVNRLDMAIGWTECRKANQISPGDSIIFELVE--QGVMQFHIFR 277
                         789*****9999877..4458***************5.45556688999********************875..6767888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-238106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-238109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.49311104IPR003340B3 DNA binding domain
CDDcd100173.01E-2012102No hitNo description
SMARTSM010193.2E-1414104IPR003340B3 DNA binding domain
PfamPF023626.1E-1723103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-17180277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-15180277IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-6187279IPR003340B3 DNA binding domain
CDDcd100171.04E-9197277No hitNo description
PROSITE profilePS5086311.702199279IPR003340B3 DNA binding domain
PfamPF023625.8E-10199278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGPRKRSPK KPSFFKILIG DFYQRLRIPP KFIENFNGQS LRKCALRGPS RQWWDVKLEE  60
RENSLFFRDG WQGFVKDHVL EVGDLLVFSY NGKSKFKVKI YDRSACEKNV EVAERRSGSP  120
VSLVNKGNQA QVKNEIVELD TEDCENKTID SDRRSCKYPI SEKRPVSFCV QETSTGSILF  180
KSENPCFLVC SRKQHLLYRV TIPNKLAVAE GLRGRDAVIL QDPTGRSWLV ELRVECVNRL  240
DMAIGWTECR KANQISPGDS IIFELVEQGV MQFHIFRGAV RGNRLSVITA APNVKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G178100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416902.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A251PM620.0A0A251PM62_PRUPE; Uncharacterized protein
STRINGXP_008226600.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-22B3 family protein