PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G178100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 297aa MW: 33830.9 Da PI: 9.8801 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.2 | 1.7e-19 | 24 | 103 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +rl++p kf+e+++g+ + ++ l+ +s + W+vkl + + ++ ++++GW++Fvk++ L++gD +vF+++g+s+f +vk++++ Prupe.4G178100.1.p 24 QRLRIPPKFIENFNGQ--SLRKCALRGPSRQWWDVKL--EERENSLFFRDGWQGFVKDHVLEVGDLLVFSYNGKSKF--KVKIYDR 103 68********999888..4568***************..********************************998999..9999987 PP | |||||||
2 | B3 | 37.3 | 5e-12 | 199 | 277 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 r+++p+k a + g+ + ++l+d++grsW v+l+ + +r ++ GW e kan++ gD+++F+l++ ++ + +++fr Prupe.4G178100.1.p 199 RVTIPNKLAVAEGLR--GRDAVILQDPTGRSWLVELR-VECVNRLDMAIGWTECRKANQISPGDSIIFELVE--QGVMQFHIFR 277 789*****9999877..4458***************5.45556688999********************875..6767888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-23 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-23 | 8 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.493 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.01E-20 | 12 | 102 | No hit | No description |
SMART | SM01019 | 3.2E-14 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-17 | 23 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-17 | 180 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-15 | 180 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.5E-6 | 187 | 279 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-9 | 197 | 277 | No hit | No description |
PROSITE profile | PS50863 | 11.702 | 199 | 279 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-10 | 199 | 278 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MAGPRKRSPK KPSFFKILIG DFYQRLRIPP KFIENFNGQS LRKCALRGPS RQWWDVKLEE 60 RENSLFFRDG WQGFVKDHVL EVGDLLVFSY NGKSKFKVKI YDRSACEKNV EVAERRSGSP 120 VSLVNKGNQA QVKNEIVELD TEDCENKTID SDRRSCKYPI SEKRPVSFCV QETSTGSILF 180 KSENPCFLVC SRKQHLLYRV TIPNKLAVAE GLRGRDAVIL QDPTGRSWLV ELRVECVNRL 240 DMAIGWTECR KANQISPGDS IIFELVEQGV MQFHIFRGAV RGNRLSVITA APNVKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G178100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020416902.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A251PM62 | 0.0 | A0A251PM62_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226600.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G178100.1.p |