PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G174000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 458aa MW: 52436.8 Da PI: 6.0653 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.6 | 3.8e-17 | 17 | 69 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+eq++ Le+ F +n+++ e++ LAk+lg++ rqV +W+qN+Ra++k Prupe.4G174000.1.p 17 KKRLTQEQVNLLERSFTSNNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWK 69 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109.2 | 2.8e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl++eqv+lLE+sF++++kLeperK la++Lg+ prqva+W+qn+RAR+kt+ lE dy+a+++++++ +e++rLek+ve+L eelk Prupe.4G174000.1.p 16 NKKRLTQEQVNLLERSFTSNNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWKTRSLELDYNAIQAKLETALAEKRRLEKDVERLGEELK 106 79**************************************************************************************998 PP HD-ZIP_I/II 93 e 93 + Prupe.4G174000.1.p 107 K 107 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.758 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-13 | 14 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-14 | 17 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-16 | 17 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.10E-13 | 17 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-18 | 18 | 78 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
Pfam | PF11789 | 4.8E-12 | 353 | 413 | IPR004181 | Zinc finger, MIZ-type |
SuperFamily | SSF57850 | 2.25E-7 | 367 | 436 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 9.5E-6 | 368 | 411 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006974 | Biological Process | cellular response to DNA damage stimulus | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0016925 | Biological Process | protein sumoylation | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0045931 | Biological Process | positive regulation of mitotic cell cycle | ||||
GO:0060250 | Biological Process | germ-line stem-cell niche homeostasis | ||||
GO:0080038 | Biological Process | positive regulation of cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0019789 | Molecular Function | SUMO transferase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MEFFHTPNHK HSFQHNKKRL TQEQVNLLER SFTSNNKLEP ERKLLLAKQL GIPPRQVAIW 60 YQNKRARWKT RSLELDYNAI QAKLETALAE KRRLEKDVER LGEELKKAHD LVLVLNQTQE 120 LPAHPVICSM FNSSSAEEGV GSSSLQQHED QDNNSDPFFL FLFLVFNFDG VRISFSIHMH 180 MGEYQGKLTY KKDITVWRYP SQSFIVITQR PPWPRPPLLE LMAPQAGSEP PQPLSTRTTS 240 LLSLAVGAMK EIAVDLERDN QFERVKELEN AVIELLGTHE DCSHFSSTIQ SVGEKYQPGP 300 ELTDFDQLFK NEVAMLKANS FSDPQNHPLM RQFREAVWNV HHSGEPMPGE EQEDIVMTSN 360 QCNILNVTCP LSGKPITELQ HPVRSVVCKH VYDKGSIMHY LRSKNTRCPV AACPKLLQAD 420 KVVCDPLLLV EIDELRAMKE QTVMTDVIED FTELDEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G174000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A251PLZ9 | 0.0 | A0A251PLZ9_PRUPE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-30 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G174000.1.p |