PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G172900.2.p
Common NamePRUPE_ppa007389mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 368aa    MW: 40394.4 Da    PI: 7.5864
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G172900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-071374655
                        S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        +ft++++ e+e+  ++  n  p +e    LA+k            ++ +qV +WFqNrR+  
  Prupe.4G172900.2.p 13 RFTQSEVSEMEAILQQhnNTMPAREVLVALADKFsesaerkgkiAVQMKQVWNWFQNRRYAI 74
                        69************9766999*********************99***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-11476IPR009057Homeodomain-like
SMARTSM003896.8E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-81279IPR009057Homeodomain-like
CDDcd000866.85E-51375No hitNo description
PROSITE profilePS5007110.0421377IPR001356Homeobox domain
PfamPF000463.7E-51374IPR001356Homeobox domain
PfamPF167191.1E-40128254IPR032001SAWADEE domain
CDDcd000240.00201141174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQSEVS EMEAILQQHN NTMPAREVLV ALADKFSESA ERKGKIAVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM SRDDSNPVRN VPQGPQPIAA PIHAPSGSGK  120
GASENSIFEF EAKSGRDGAW YDVANFLSHR YLETGDPEVL VRFAGFGPEE DEWVNVRKHV  180
RQRSLPCESS ECVAVLPGDL ILCFQEGKEQ ALYFDAHVLD AQRRRHDVRG CRCRFLVRYV  240
HDQSEEIVPL RKVCRRPETD YRLQQLHAVN EAASAEQKSM DHFMGSVTSA EMMQKQQNTD  300
AASAPPVLHA NASLATQSTT PEFKGSEVST VISSGNSNFP PGSAVITSGT ATVVVPGGSV  360
ENMPKGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461302586134SHH1 SAWADEE
4iur_B2e-461302586134SHH1 SAWADEE
4iut_A2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461302586134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.51550.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G172900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211460.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-147SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A251PLX90.0A0A251PLX9_PRUPE; Uncharacterized protein
STRINGEMJ126590.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-136sequence-specific DNA binding transcription factors;sequence-specific DNA binding