PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G172900.1.p
Common NamePRUPE_ppa007389mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 370aa    MW: 40593.6 Da    PI: 7.5864
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G172900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-071374655
                        S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        +ft++++ e+e+  ++  n  p +e    LA+k            ++ +qV +WFqNrR+  
  Prupe.4G172900.1.p 13 RFTQSEVSEMEAILQQhnNTMPAREVLVALADKFsesaerkgkiAVQMKQVWNWFQNRRYAI 74
                        69************9766999*********************99***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-11476IPR009057Homeodomain-like
SMARTSM003896.8E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-81279IPR009057Homeodomain-like
PfamPF000463.7E-51374IPR001356Homeobox domain
CDDcd000867.31E-51375No hitNo description
PROSITE profilePS5007110.0421377IPR001356Homeobox domain
PfamPF167191.1E-40130256IPR032001SAWADEE domain
CDDcd000240.00203143176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQSEVS EMEAILQQHN NTMPAREVLV ALADKFSESA ERKGKIAVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM SRDDSNPVRN VPQGPQPIAA PIHAPSAQGS  120
GKGASENSIF EFEAKSGRDG AWYDVANFLS HRYLETGDPE VLVRFAGFGP EEDEWVNVRK  180
HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR  240
YVHDQSEEIV PLRKVCRRPE TDYRLQQLHA VNEAASAEQK SMDHFMGSVT SAEMMQKQQN  300
TDAASAPPVL HANASLATQS TTPEFKGSEV STVISSGNSN FPPGSAVITS GTATVVVPGG  360
SVENMPKGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461322606134SHH1 SAWADEE
4iur_B2e-461322606134SHH1 SAWADEE
4iut_A2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.51550.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G172900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211460.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-147SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM5WG160.0M5WG16_PRUPE; Uncharacterized protein
STRINGEMJ126590.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-136sequence-specific DNA binding transcription factors;sequence-specific DNA binding