PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G154100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family STAT
Protein Properties Length: 694aa    MW: 77744.2 Da    PI: 6.0549
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G154100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT195.45.6e-612223431122
                STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 
                         ldvvll+a+++p++k++ev+asL+yad+g++vek++d eapLL+s dGvef+s drp+k+l+G+asfklkisqLsskcdnr+fri+f++pk
  Prupe.4G154100.2.p 222 LDVVLLDAFSHPINKELEVIASLVYADNGAPVEKTSDGEAPLLASQDGVEFASCDRPSKMLHGHASFKLKISQLSSKCDNRMFRIMFHMPK 312
                         8****************************************************************************************** PP

                STAT  92 lkkypfleavskpirCisrsrntrsssltkk 122
                         l++ypfl+a+s pirCisr+r+tr+ss+ +k
  Prupe.4G154100.2.p 313 LETYPFLKAFSPPIRCISRNRSTRMSSRLWK 343
                         **************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.101.4E-7587677IPR000980SH2 domain
SuperFamilySSF555501.81E-8591684IPR000980SH2 domain
PROSITE profilePS5000110.048595677IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MANEEKDSVE YYSLLKDFRA EIEVQEGAFS LCFWLYLMSS TAFPARLIQV QSGATEGAPF  60
LVLSEKKKMV LLPLGIVHKE APETCDLTSL SEVPHVAMET EFPMEKWIHI GCEVSSDFVL  120
LHIDGEIAGK RAMSPLFNKD SISGGLTKIT LVCGGGDDNS LQGYVHNHKV LPLTSSIMEY  180
YAKDPPLQLS IDNSSASEIE EGSDGVWSIV GGKASCRRIF SLDVVLLDAF SHPINKELEV  240
IASLVYADNG APVEKTSDGE APLLASQDGV EFASCDRPSK MLHGHASFKL KISQLSSKCD  300
NRMFRIMFHM PKLETYPFLK AFSPPIRCIS RNRSTRMSSR LWKRPASAND QLNLSQLSGL  360
DDETLELHHS SIHEEKLSPS SKRCRLGQDD ECNSHSRTAN QVKNVVRRSD SLEELDDSQT  420
DSENPEARNS ALKSTSSSRN PMSDATIFKY CLAGLTEKTL LLKEISSTVS NEELLSFSHQ  480
VSLYSGCSHH RHQIAMAKQL IEEGNKAWNL ISQNKHQVPW ESVVFEIEEQ FMKIAACNSR  540
ALTQQDFELL RRIAGCQEYL AQENFEKMWC WLYPVALTLS KDWINTMWSS TSPKWIEGFI  600
TKEEAETSLQ GSRGLQESGT FVLRFPNSRS WPHPDAGSLV VTYVGSKHTI HNKLISLDQM  660
FSFAEREKNA KPLQDMLLAE PELSRLGRII RSR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G154100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418856.10.0uncharacterized protein LOC18779814 isoform X2
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A251PL130.0A0A251PL13_PRUPE; Uncharacterized protein
STRINGXP_008226365.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]