PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G136300.1.p
Common NamePRUPE_ppa026315mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 367aa    MW: 41291.6 Da    PI: 4.5734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-151663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++ Ed++l+  +++ G ++W++ ++  g+ R++k+c++rw +yl
  Prupe.4G136300.1.p 16 RGPWSPAEDLRLITFIQKNGHDNWRALPKQAGLLRCGKSCRLRWINYL 63
                        89******************************99************97 PP
2Myb_DNA-binding476.1e-1569114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T eE++ ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
  Prupe.4G136300.1.p  69 RGNFTREEEDSIIRLHEAWGNK-WSKIASQFP-GRTDNEIKNVWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-22766IPR009057Homeodomain-like
PROSITE profilePS5129413.9951163IPR017930Myb domain
SuperFamilySSF466891.76E-2814110IPR009057Homeodomain-like
SMARTSM007178.4E-121565IPR001005SANT/Myb domain
PfamPF002494.4E-141663IPR001005SANT/Myb domain
CDDcd001671.05E-81863No hitNo description
PROSITE profilePS5129424.55464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2667118IPR009057Homeodomain-like
SMARTSM007171.4E-1368116IPR001005SANT/Myb domain
PfamPF002496.1E-1469114IPR001005SANT/Myb domain
CDDcd001671.60E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGKGRTPCCD KNQVKRGPWS PAEDLRLITF IQKNGHDNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTREEEDSI IRLHEAWGNK WSKIASQFPG RTDNEIKNVW NTHLKKKLGF  120
KNSEFCGEES KELSSITSSS SSSSSSASFL SGGKPSVAGE LEHQSPDQET SMANNNPHHD  180
PCILTIPEEI DLDSPMELIN QFRPDPKDLK ELTSSSVSSN ESNGSSSSQL DISRPSEEQM  240
DFLFDFSEPN YDIPLEPDSD FWNMFDVPLV PFQSSEVQLN QAEASKSSNY GQHENEKWLS  300
YLESELGLDQ PTADSTGQEF LAQVTTGQLL PETFQCDKMP NPAAEFDQSL DYFQMWPSLP  360
HNNSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-24161184105C-Myb DNA-Binding Domain
1msf_C2e-24161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G136300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5665961e-33AJ566596.1 Theobroma cacao microsatellite, clone mTcCIR277.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213397.10.0transcription factor MYB63
TrEMBLM5WMX00.0M5WMX0_PRUPE; Uncharacterized protein
STRINGEMJ145960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-72myb domain protein 58