PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G126900.1.p
Common NamePRUPE_ppa022859mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 336aa    MW: 37653.3 Da    PI: 7.5964
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G126900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l++ ++  G g+W++++++ g+ R++k+c++rw +yl
  Prupe.4G126900.1.p 13 RGLWSPEEDEKLIKHITIRGHGSWSSVPKHAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding57.53e-1866109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Prupe.4G126900.1.p  66 RGSFTPEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25563IPR009057Homeodomain-like
PROSITE profilePS5129417.939860IPR017930Myb domain
SuperFamilySSF466892.36E-2910107IPR009057Homeodomain-like
SMARTSM007174.0E-111262IPR001005SANT/Myb domain
PfamPF002492.8E-141360IPR001005SANT/Myb domain
CDDcd001674.92E-101660No hitNo description
PROSITE profilePS5129427.36961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2664115IPR009057Homeodomain-like
SMARTSM007174.1E-1765113IPR001005SANT/Myb domain
PfamPF002491.4E-1666109IPR001005SANT/Myb domain
CDDcd001678.72E-1368108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGHRCCGKQK VKRGLWSPEE DEKLIKHITI RGHGSWSSVP KHAGLQRCGK SCRLRWINYL  60
RPELKRGSFT PEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPKTHNLISS HQRSSNKIGG SSRPQPHDRQ KPISVNFTTV NSQKKNCSAE LNSSSSPIVT  180
LYNAQQPPMV QTMATPPTHQ YHDDQNPNAA WTSVKDPTFY EPSAENISSS SSSSMNLSVF  240
GLLDNSNCLY AAGAQPFEAP RILLEGEQSK GSEEVLQQEK ENLLEMEMIK AIDQDMDASL  300
MESSSFDFSF LESTLMSTGV TSHDLNSMAD FAWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G126900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417786.10.0myb-related protein 330
TrEMBLA0A251PL710.0A0A251PL71_PRUPE; Uncharacterized protein
STRINGEMJ142070.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-86myb domain protein 67