PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G124000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 487aa MW: 54228.5 Da PI: 8.4861 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.1 | 8.4e-10 | 124 | 148 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Prupe.4G124000.2.p 124 GEKDCAHYMLTRTCKFGELCKFDHP 148 7889********************8 PP | |||||||
2 | zf-CCCH | 28.4 | 2.9e-09 | 175 | 201 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Prupe.4G124000.2.p 175 PGEPDCPYFIKTQRCKFGMRCKFNHPK 201 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.5 | 9.2e-13 | 224 | 248 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Prupe.4G124000.2.p 224 EPPCAFYMKTGQCKFGATCKFHHPK 248 79*********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 298 | 323 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Prupe.4G124000.2.p 298 PGEPDCPFYLKTGSCKYGATCRYNHP 323 5789*********************9 PP | |||||||
5 | zf-CCCH | 36.9 | 6e-12 | 381 | 403 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Prupe.4G124000.2.p 381 IECDYYMKTGECRFGEQCKYHHP 403 68********************8 PP | |||||||
6 | zf-CCCH | 40.3 | 5.3e-13 | 434 | 459 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Prupe.4G124000.2.p 434 GVAICVYYLKTGTCKYGATCKFDHPP 459 5789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.436 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 124 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 174 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-6 | 176 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 179 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 180 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 221 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.948 | 221 | 249 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 224 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 224 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 226 | 247 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-7 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-10 | 299 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-5 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 303 | 322 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 376 | 406 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 377 | 405 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 377 | 404 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 380 | 403 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 383 | 403 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.516 | 432 | 460 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-8 | 432 | 459 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-10 | 434 | 459 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 435 | 459 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-6 | 437 | 457 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MVQLGTVFFI CLINCLMSSS LVFLYWHLGP YIYKNRSTRK FIFVFLIYVL SYSKLLFKLY 60 LYGNLYVSSG FLVYTFLLRT LALYHQSFMG AYNTIGQEAW YSALAKRPRY ESASNLPIYP 120 QRPGEKDCAH YMLTRTCKFG ELCKFDHPIW VPEGGIPDWK EVPLVAPSES LPERPGEPDC 180 PYFIKTQRCK FGMRCKFNHP KEKLAAAVAS ENADVFALPE RPSEPPCAFY MKTGQCKFGA 240 TCKFHHPKDI QIPSAEQENK IGETGTTIQP EGTGFAVKLP VSFSPALLYN SKELPVRPGE 300 PDCPFYLKTG SCKYGATCRY NHPDRYAINP PIGAISHPIV APPAAGLNIG VINPAASIYQ 360 TLAQPTVGGG QTVYPQRFGQ IECDYYMKTG ECRFGEQCKY HHPIDRSAVT LSTTKPVQQQ 420 NVKLTLAGLP RREGVAICVY YLKTGTCKYG ATCKFDHPPP GEVMGMAASQ GASGGEANDF 480 THEQQQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G124000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 6e-64 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 6e-64 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211846.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A251PJL9 | 0.0 | A0A251PJL9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13045 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G124000.2.p |