PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.4G119700.1.p | ||||||||
Common Name | PRUPE_ppa026618mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38605.1 Da PI: 6.6685 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde l++ ++ +G g+W++I++ g+ R++k+c++rw +yl Prupe.4G119700.1.p 13 RGLWSPEEDEMLINHINTYGHGSWSSIPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.6e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Prupe.4G119700.1.p 66 RGSFSEQEERTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-27 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.43 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.76E-12 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.643 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.34E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MGHKCCSKQK VKRGLWSPEE DEMLINHINT YGHGSWSSIP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFS EQEERTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLPS SKTNHSTNNN ISECSFYPTL PKPSYFFPVN SHVSDTSIDI LKAHFQALSS 180 ISSSPDTNHI NPDHSLHGSS TLSSVYEYRN HNTVWTLQEK LNSNAFMEAM NQPSVGASVP 240 TSSCHSYPLS ELEIVNENCK WGTGNFEPTK PDQEMFMQPQ EDKACEVGIE KANMLIDEQT 300 NMDASFGSSN SDFDFAESTQ LPYGLYNYHL SPMMDQLQWN G* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 13 | 115 | 7 | 108 | B-MYB |
1h8a_C | 3e-30 | 13 | 115 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.4G119700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007213378.1 | 0.0 | transcription repressor MYB4 | ||||
TrEMBL | M5WLA0 | 0.0 | M5WLA0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14577 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-83 | myb domain protein 67 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.4G119700.1.p |
Entrez Gene | 18780649 |