PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G115100.4.p

Common Name

PRUPE_ppa001166mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 891aa MW: 102043 Da PI: 8.0339

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G115100.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.7	1.1e-24	95	203	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkek 72 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e++++ +++ r +r+ ++t+Cka+++vk++ Prupe.4G115100.4.p 95 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRYGSKRESSTAevpesvsnsressicssvkRKRGRASRSWEKTDCKACMHVKRQ- 184 5****************************************99999***********998888899*************9. PP FAR1 73 dgkwevtkleleHnHelap 91 dg+w + ++ +eHnHe++p Prupe.4G115100.4.p 185 DGRWIIRSFIKEHNHEIFP 203 **************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-22	95	203	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-30	322	414	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.198	602	638	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-5	611	636	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-4	613	640	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence Send to blast
MGIDLEQPSG EYHKEDNRPS VNNIVDGRGE ENHRAIVSVT NGPVNDKENA GQNVNGRVSD 60 TRNKTVTRDE INLNSSRDSE PHDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG 120 KFIDAKFACT RYGSKRESST AEVPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH 180 VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNLDLGTG DADGLHAIRR RTKKMYVNMA 240 RQSGGYKQSD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ 300 RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN 360 ESKSTYVWLM RAWLKAMGGL APKIILSDQD KVLKEAIAEV LPDSRHCLCL WHILGKIPEK 420 LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT 480 YMRGIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH 540 KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ 600 DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH SIPSQYILKR WTKDAKNRQT 660 LREGSASVDC RVKRYNDLCE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESTNNSIQSV 720 IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA 780 PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG 840 VGQLHFRPQS IPSCFDIPDG LQDTDQSTVG PTQLHGLASR HLHSKDLSRQ *

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence Send to blast

MGIDLEQPSG EYHKEDNRPS VNNIVDGRGE ENHRAIVSVT NGPVNDKENA GQNVNGRVSD  60
TRNKTVTRDE INLNSSRDSE PHDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG  120
KFIDAKFACT RYGSKRESST AEVPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH  180
VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNLDLGTG DADGLHAIRR RTKKMYVNMA  240
RQSGGYKQSD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ  300
RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN  360
ESKSTYVWLM RAWLKAMGGL APKIILSDQD KVLKEAIAEV LPDSRHCLCL WHILGKIPEK  420
LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT  480
YMRGIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH  540
KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ  600
DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH SIPSQYILKR WTKDAKNRQT  660
LREGSASVDC RVKRYNDLCE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESTNNSIQSV  720
IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA  780
PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG  840
VGQLHFRPQS IPSCFDIPDG LQDTDQSTVG PTQLHGLASR HLHSKDLSRQ *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.6838	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G115100.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007214615.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_020418383.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	M5WQ40	0.0	M5WQ40_PRUPE; Uncharacterized protein
STRING	EMJ15814	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G115100.4.p
Entrez Gene	18779383

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]