PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G113500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 32366.6 Da    PI: 8.1206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G113500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.7e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  Prupe.4G113500.1.p  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59
                        59***********************************************96 PP
2K-box652.7e-2276169698
               K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         g++  +++++e+++ el+k+++e+++L+ ++ ++ GedL+   +++L +Le+qLe+s++++R++K e+l +qi++l+   k+ +een++L 
  Prupe.4G113500.1.p  76 GTRiFQHNDTEYMNAELRKMRRETQSLELSLQRYTGEDLSCVRFEDLVELEHQLEESVNRVRARKFEVLQQQIDNLRATTKRREEENEQLF 166
                         555567899********************************************************************************97 PP

               K-box  96 kkl 98 
                         + +
  Prupe.4G113500.1.p 167 HLI 169
                         765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.65E-38272No hitNo description
SuperFamilySSF554551.83E-29283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-2081166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.17385175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSSMEELIQR YQVARGTRIF QHNDTEYMNA ELRKMRRETQ SLELSLQRYT GEDLSCVRFE  120
DLVELEHQLE ESVNRVRARK FEVLQQQIDN LRATTKRREE ENEQLFHLIK AHQNAAFGHE  180
QAHEAEQVEN LQILPKSEEH RHVLDQFPFG GEEQPSSVLK LATLPQPQPQ FNPYSLQPPH  240
QPSLLDFNLS GRSIYGTYTY IVIRAFSINL SRLYHYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20171169MEF2C
5f28_B7e-20171169MEF2C
5f28_C7e-20171169MEF2C
5f28_D7e-20171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G113500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417166.10.0MADS-box protein FBP24
RefseqXP_020417167.10.0MADS-box protein FBP24
SwissprotQ9ATE52e-68FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A251PJ110.0A0A251PJ11_PRUPE; Uncharacterized protein
STRINGXP_008225840.11e-179(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]