PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G090200.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 186aa    MW: 20239.6 Da    PI: 7.0292
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G090200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA51.14.4e-16107141136
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                         +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrk
  Prupe.4G090200.2.p 107 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRK 141
                         69***************************8.66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.2E-9105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.261106141IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-12108146IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTSSVHDRSD NSESDDQQSH SSLPAIGISH PGIPTPNIQY AAPPQVGTGH AVAPAAYPYP  60
DPYYRSIFAP YDTQPYPPQP YGGQPTVHLQ LMGIQQAGVP LPSDAVEEPV FVNAKQYHGI  120
LRRRQSRAKA ESENKALKSR KMEHPDYLEA IATHSRGHMK YLFFNNCQGM EVPNTSLASL  180
GSASL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.5840.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G090200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212071.11e-98nuclear transcription factor Y subunit A-7
RefseqXP_008225593.11e-98PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP14e-46NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A251PJA91e-134A0A251PJA9_PRUPE; Uncharacterized protein
STRINGXP_008225593.14e-98(Prunus mume)
STRINGEMJ132704e-98(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.28e-31nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]