PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G090200.1.p

Common Name

PRUPE_ppa011627mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YA

Protein Properties

Length: 203aa MW: 22125.3 Da PI: 8.4266

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G090200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	107	163	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh+hAlrR+Rg+gGrF Prupe.4G090200.1.p 107 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHQHALRRARGCGGRF 163 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.3E-36	105	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.704	106	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-27	108	163	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.9E-24	109	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	111	131	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	8.9E-24	140	163	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTSSVHDRSD NSESDDQQSH SSLPAIGISH PGIPTPNIQY AAPPQVGTGH AVAPAAYPYP 60 DPYYRSIFAP YDTQPYPPQP YGGQPTVHLQ LMGIQQAGVP LPSDAVEEPV FVNAKQYHGI 120 LRRRQSRAKA ESENKALKSR KPYLHESRHQ HALRRARGCG GRFLNAKKND NQQDEMSSGD 180 KSQPNINLNS DKSELASSDG TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-22	106	171	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.584	0.0	fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G090200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007212071.1	1e-148	nuclear transcription factor Y subunit A-7
Refseq	XP_008225593.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	4e-74	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M5X2H8	1e-146	M5X2H8_PRUPE; Uncharacterized protein
STRING	XP_008225593.1	1e-147	(Prunus mume)
STRING	EMJ13270	1e-147	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-58	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Prupe.4G090200.1.p
Entrez Gene	18781351

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]