PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G090100.1.p | ||||||||
Common Name | PRUPE_ppa001343mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 850aa MW: 93018.9 Da PI: 6.2477 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Prupe.4G090100.1.p 21 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79 6789*****************************************************97 PP | |||||||
2 | START | 168.5 | 4.4e-53 | 170 | 376 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d+ W ++++ ++l i g g+ Prupe.4G090100.1.p 170 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWFRDCRCLDVLSLIPAGngGT 259 68999*****************************************************.8888888888****************9999** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p+ s+s+vRae+lpSg+li+p+++g+s + +v+hvdl+++++ Prupe.4G090100.1.p 260 IELTYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgppSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSV 350 ********************************************99999999*************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXX CS START 178 hwllrslvksglaegaktwvatlqrq 203 +++lrsl++s+ + ++k++ ++l++ Prupe.4G090100.1.p 351 PEVLRSLYESSKILAQKMTISALRHI 376 ********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-19 | 8 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.694 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-15 | 18 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-16 | 20 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.00E-16 | 21 | 81 | No hit | No description |
Pfam | PF00046 | 4.4E-16 | 21 | 79 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.71E-6 | 73 | 112 | No hit | No description |
PROSITE profile | PS50848 | 26.76 | 160 | 388 | IPR002913 | START domain |
CDD | cd08875 | 8.70E-69 | 164 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.0E-23 | 168 | 374 | IPR023393 | START-like domain |
SMART | SM00234 | 7.3E-50 | 169 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-37 | 170 | 381 | No hit | No description |
Pfam | PF01852 | 1.2E-50 | 170 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 9.5E-50 | 704 | 848 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MALVMNRDSP GSSSKQMDSS KYVRYTPEQV EALERVYSEC PKPSSLRRQQ LIRECPILSN 60 IEPKQIKVWF QNRRCREKQR KESSRLQTVN RKLTAMNKLL MEENDRLQKQ VSHLVYENGF 120 MRQQLHSASG TTTDNSCESV VMSGQHQQQQ NPTPQHPQRD ANNPAGLLAI AEETLAEFLS 180 KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRTSWF 240 RDCRCLDVLS LIPAGNGGTI ELTYMQTYAP TTLAAARDFW TLRYTTSLED GSLVVCERSL 300 TSSTGGPTGP PSASFVRAEM LPSGYLIRPC EGGGSIINIV DHVDLDAWSV PEVLRSLYES 360 SKILAQKMTI SALRHIRQIA QETSGEIQYG GGRQPAVLRT FCQRLCRGFN DAVNGFADDG 420 WSLMGSDGVE DVTITINSSP NKFLGSQYNA SIFPTFGGGV LCAKASMLLQ SVPPALLVRF 480 LREHRSEWAD YGVDAYSAAC LKASPYAVPC ARPGGFPSSQ VILPLAQTVE NEEFLEVVRL 540 EGHAFSPEDV ALARDMYLLQ LCSGVDENAV GSCAQLVFAP IDESFADDAP LLPSGFHVIP 600 LDPKTDGPTA NRTLDLASTL EVGPSGSRPV NEADGNSYNL RSVLTIAFQF TFENHLRDNV 660 AAMARQYVRS VVSSVQRVAM AIAPSRLSSQ MVPKPLPGSP EAHTLARWIC RSYRIHTGAE 720 LFRVDSPSGD AVLKQLWHHS DAIMCCSVKT NASPVFTFAN QAGLDMLETT LVALQDIMLD 780 KILDEAGRKI LCSEFSKIMQ QGFAYLPAGL CASSMGRPVS YDQAVAWKVV NDDDSNHCLA 840 FMFMSWSFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G090100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ000552 | 0.0 | KJ000552.1 Prunus persica homeobox protein 14 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214622.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 | ||||
Refseq | XP_008225592.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | M5WRH3 | 0.0 | M5WRH3_PRUPE; Homeobox protein 14 | ||||
STRING | XP_008225592.1 | 0.0 | (Prunus mume) | ||||
STRING | EMJ15821 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G090100.1.p |
Entrez Gene | 18778997 |
Publications ? help Back to Top | |||
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