PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G083500.6.p | ||||||||
Common Name | PRUPE_ppa004612mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 501aa MW: 54387 Da PI: 7.9981 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.9 | 5.1e-36 | 67 | 237 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ Prupe.4G083500.6.p 67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrascehgfdsae 157 689*************************************************************999999999999998888888766666 PP TCP 66 .......ssssasec..eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 +++ +++++++++n+s++ + +++a+s++s++s+ s l+l++ r kar+rarer ++++ +++ Prupe.4G083500.6.p 158 veleghgHGDHN--YhhHQNQNQNQTQNQSQHLSLSKSACSSNSETSKGSGLSLSRseirVNRVKARERARERAAKDKEKES 237 666655322222..12355666666666666677777777777777777778887753335559999999998777766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-43 | 68 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.345 | 69 | 127 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.441 | 215 | 235 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDPSCLDL KRAATADAGN RLRGWHHSRI 60 IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA 120 ADAIAELPSL NNSFPDTPKQ LSDEKRASCE HGFDSAEVEL EGHGHGDHNY HHHQNQNQNQ 180 TQNQSQHLSL SKSACSSNSE TSKGSGLSLS RSEIRVNRVK ARERARERAA KDKEKESNES 240 ASHIAHHHQQ NSSNLNNSIS QSASFTELLT GGIGTNSSNN NNSPTAAAHQ QQNHGGGGEP 300 ILFHKATAAG GGGPMDYFSS GLLGLSSSTR THHSSGFSGQ IQLGMNSIPQ TMSVVSPFSV 360 SGDHHHNHNP ELQHFSFVPD HLIPVTTSSQ PGNGGDYNLN FSISSSGGLA GFNRGTLQSN 420 SSSSQSLLPH HLQRFSPIDG SSNVPFFIGA AAAPTMENHH HHHHHHQQHQ QQFPAGFDRR 480 LQHPYGDGSR HSDHKGKAKN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-24 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-24 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G083500.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB531020 | 1e-159 | AB531020.1 Malus x domestica MdTCP2B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211837.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_020417152.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_020417153.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_020417154.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_020417155.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_020417156.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | M5WID2 | 0.0 | M5WID2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13036 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-43 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G083500.6.p |
Entrez Gene | 18779022 |