PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G083500.1.p
Common NamePRUPE_ppa004612mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 501aa    MW: 54387 Da    PI: 7.9981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G083500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.1e-36672372134
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                           
  Prupe.4G083500.1.p  67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrascehgfdsae 157
                         689*************************************************************999999999999998888888766666 PP

                 TCP  66 .......ssssasec..eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                                  +++      +++++++++n+s++ + +++a+s++s++s+ s l+l++      r kar+rarer ++++ +++
  Prupe.4G083500.1.p 158 veleghgHGDHN--YhhHQNQNQNQTQNQSQHLSLSKSACSSNSETSKGSGLSLSRseirVNRVKARERARERAAKDKEKES 237
                         666655322222..12355666666666666677777777777777777778887753335559999999998777766654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4368235IPR005333Transcription factor, TCP
PROSITE profilePS5136931.34569127IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.441215235IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDPSCLDL KRAATADAGN RLRGWHHSRI  60
IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA  120
ADAIAELPSL NNSFPDTPKQ LSDEKRASCE HGFDSAEVEL EGHGHGDHNY HHHQNQNQNQ  180
TQNQSQHLSL SKSACSSNSE TSKGSGLSLS RSEIRVNRVK ARERARERAA KDKEKESNES  240
ASHIAHHHQQ NSSNLNNSIS QSASFTELLT GGIGTNSSNN NNSPTAAAHQ QQNHGGGGEP  300
ILFHKATAAG GGGPMDYFSS GLLGLSSSTR THHSSGFSGQ IQLGMNSIPQ TMSVVSPFSV  360
SGDHHHNHNP ELQHFSFVPD HLIPVTTSSQ PGNGGDYNLN FSISSSGGLA GFNRGTLQSN  420
SSSSQSLLPH HLQRFSPIDG SSNVPFFIGA AAAPTMENHH HHHHHHQQHQ QQFPAGFDRR  480
LQHPYGDGSR HSDHKGKAKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2474128155Putative transcription factor PCF6
5zkt_B7e-2474128155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G083500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310201e-159AB531020.1 Malus x domestica MdTCP2B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211837.10.0transcription factor TCP2
RefseqXP_020417152.10.0transcription factor TCP2
RefseqXP_020417153.10.0transcription factor TCP2
RefseqXP_020417154.10.0transcription factor TCP2
RefseqXP_020417155.10.0transcription factor TCP2
RefseqXP_020417156.10.0transcription factor TCP2
TrEMBLM5WID20.0M5WID2_PRUPE; Uncharacterized protein
STRINGEMJ130360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2