PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G057100.1.p

Common Name

PRUPE_ppb024383mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 287aa MW: 32498.8 Da PI: 6.6512

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G057100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.4	6.1e-35	110	255	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaess 78 +++k rhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+++ak+ai +l ++ ++++++ +es Prupe.4G057100.1.p 110 TARKERHSKVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESelpgkeydctninsAQQTEQDIGEESM 200 789*************************************************************777666666533221222222222222 PP TCP 79 sssasnsssgkaaksaakskksqksaa.salnlak.esrakarararertrekmr 131 ++ +++++s ++++ ++ +s k++ +++l+ + ++a a t +km Prupe.4G057100.1.p 201 RQFQHHQRSYGGEPEKLNNVNSFKEPVlDHHQLSSmNYAEEALNSASSLTDSKME 255 2222222222333333322222222220223333323335555556666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-31	111	216	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.695	112	170	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSHLQDILRL QMLQQRGSKN EDQDQPEDVQ EEEQQSQKRL IGQYQHVQEP PNYGPLNGKM 60 LNTHTAKSSR KSCYSMSSSS SHLASEQAEI NNARYGKNVK VHGGHIVRST ARKERHSKVY 120 TSKGPRDRRF RLSAPTAIQF YDVQDRLGYD RPSKAIDWLI EKAKAAIEAL SESELPGKEY 180 DCTNINSAQQ TEQDIGEESM RQFQHHQRSY GGEPEKLNNV NSFKEPVLDH HQLSSMNYAE 240 EALNSASSLT DSKMEVAWFQ SLMSWNYNAG DGGEGCPFSS SHVYLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-19	117	170	1	54	Putative transcription factor PCF6
5zkt_B	3e-19	117	170	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G057100.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007214360.1	0.0	transcription factor TCP4
TrEMBL	M5WPC7	0.0	M5WPC7_PRUPE; Uncharacterized protein
STRING	EMJ15559	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14863	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	4e-38	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	Prupe.4G057100.1.p
Entrez Gene	18778505