PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G055400.1.p
Common NamePRUPE_ppa020864mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 366aa    MW: 40590 Da    PI: 6.9483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G055400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.31.2e-3316115199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleql 90 
                         aCaaC+++r+kC +dCv+apyf ae++++f++vhk+FG+sn +kllk+l++++ r +a++s ++eA+ + +dPv+G +g +++l+++++ l
  Prupe.4G055400.1.p  16 ACAACRHQRKKCDDDCVMAPYFTAEKEEAFRAVHKIFGVSNTSKLLKNLEDKNhRGRAAESFIWEACTWKQDPVNGPLGKYRQLEREIALL 106
                         7************************************************66655************************************* PP

              DUF260  91 kaelallke 99 
                         +  l++++e
  Prupe.4G055400.1.p 107 RDALQRQQE 115
                         *99998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.24315117IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-3216114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSMGSGNGGE LNSRHACAAC RHQRKKCDDD CVMAPYFTAE KEEAFRAVHK IFGVSNTSKL  60
LKNLEDKNHR GRAAESFIWE ACTWKQDPVN GPLGKYRQLE REIALLRDAL QRQQEEEEEQ  120
EKDCLALPSS TVEQESIALD QGSNNGSDMT YGYANQNLAP TNGTYSSLLQ GQEVTERKGL  180
VDNNCVTGSN YQPAVISQGG QQALGQGRQE TQRVIGFGPP LMPFDPTIQG GNGRPMRFQG  240
QGRGIAGLDC AINSPMGPNI YGQIRGHVAF DPSQRQFGQV GAAQIGPKFS EGFPGHMRAI  300
TQIQDAGFLP YHHHLLHHQP IHIQRQGMSQ AQNHHSFQQY SFNNHQSYEN GQDVEHFNQV  360
KSERR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-161711612110LOB family transfactor Ramosa2.1
5ly0_B4e-161711612110LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G055400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213503.20.0LOB domain-containing protein 27
TrEMBLA0A251PJJ50.0A0A251PJJ5_PRUPE; Uncharacterized protein
STRINGEMJ147020.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-26LOB domain-containing protein 2