PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G055300.1.p | ||||||||
Common Name | PRUPE_ppa019841mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 417aa MW: 45893.9 Da PI: 7.2975 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.6e-18 | 57 | 117 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Prupe.4G055300.1.p 57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112 | 3.1e-36 | 56 | 118 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k Prupe.4G055300.1.p 56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-7 | 45 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-12 | 53 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.511 | 53 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-9 | 55 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.50E-9 | 56 | 118 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 57 | 117 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPANCS THHQWQHDIN PSLVSNGCHR PSYSSVAGCE ERSPEPKPRW 60 NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR 120 HLHNSSKQQT HHHTHLPLTT PVSTSTLNII NAAAPSSSSS SSEKSSPKSA PNNKAFSMGF 180 SSNVAAHDVS INSPTASVNQ QSSFFQPHHQ HHSELLPEPF FFPMHPNPNC NFTQGFCFSE 240 LSNVVDVPNH GTHEQTNTNT GPCTSLLLSE IMSHGAAMSR KEYHQEDEMK DMNMKNIDPH 300 HLNYSLNVTT TSPTSHTNMV ASHTNGPTTS VAVPSPMIHN IQGGVGEAGA MDAGGAEKST 360 VFINDVAFEV GAGPFNVREA FGDDAVLIHS SGHPVLTNEW GLTLHSLHHG AFYYLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G055300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418316.1 | 0.0 | WUSCHEL-related homeobox 9 isoform X2 | ||||
TrEMBL | A0A251PG73 | 0.0 | A0A251PG73_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13975 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3824 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-65 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G055300.1.p |
Entrez Gene | 18778807 |