PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G051400.1.p | ||||||||
Common Name | PRUPE_ppa010090mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28447.6 Da PI: 9.977 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 2e-19 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+ta eAa+a++aa+++++g Prupe.4G051400.1.p 23 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAVEAARAYDAAAREFRG 72 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.0E-13 | 23 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.60E-20 | 23 | 80 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.09 | 23 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-39 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAPREKTATA VRANGNGNVK EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAVEAA 60 RAYDAAAREF RGSKAKTNFP LPSENISLNM TKNNNININN NINKNSSGSN NQSPSQSSTV 120 ESSSREPPAL MVDSLPLDLN LAQGVSTGGF GSGPMRFPFQ HHQVPSVGAV IGVPASAAAA 180 ANHVLYFDSV FRAGMVKSHQ FHQRLRFDHH NLQQHDFHAY GGGGVFACGA QSDSDSSSVV 240 DLNNHDLPRG GLLDLNLPPP PELA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 20 | 81 | 2 | 64 | ATERF1 |
3gcc_A | 1e-20 | 20 | 81 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.7311 | 1e-140 | fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G051400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT223018 | 0.0 | KT223018.1 Prunus persica ethylene responsive factor 9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211866.1 | 0.0 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | M5X1X6 | 0.0 | M5X1X6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13065 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-31 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G051400.1.p |
Entrez Gene | 18778988 |