PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G049500.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 499aa    MW: 55259.8 Da    PI: 4.8765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G049500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-18193287193
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+l++sdv+++gr+vlpkk aee+  +++ +e+++l+++d  s ++W +k++y  ++ks++y+l+ ++ +Fvk+++L++gD + +   +
  Prupe.4G049500.2.p 193 FKKELKNSDVGSLGRIVLPKKEAEENlpMLSDKEGIQLMIRDvYSDQEWGLKYKYwsNNKSRMYLLE-NTGDFVKQHKLEVGDCICLL--E 280
                         89**************************77777899******8888*******99855555556555.***************98877..3 PP

                         SSEE..E CS
                  B3  87 rsefelv 93 
                         +++++l+
  Prupe.4G049500.2.p 281 DEDKNLY 287
                         4666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-26188288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-20192288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-21192289No hitNo description
PfamPF023625.3E-14193288IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109193294IPR003340B3 DNA binding domain
SMARTSM010196.0E-17193292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDNFHPPSIP STSTITSAPQ EQHSQLSICE PMSCSPSTTC SPSTTQYYCY PAQYLAPNPG  60
LQFQYAYPYQ QAGQPMYPFL VSGQPNVVVS TEQDSLARSG WTLDALVSKA ARKERRMARQ  120
RSLSLSRNNA NAAASSESSS PSSRRHAPFP WNEDDDQGSM STSSSGAGTD MQNINRHLYT  180
FCTPDNKKLR VMFKKELKNS DVGSLGRIVL PKKEAEENLP MLSDKEGIQL MIRDVYSDQE  240
WGLKYKYWSN NKSRMYLLEN TGDFVKQHKL EVGDCICLLE DEDKNLYIST ETRAGSIHAK  300
PPSRINNNNN NNNNTDRKAN NSNSNTTAEG NTPDSNPNYA DANTNTNAKS YSNNHNAPAD  360
IPIPLAYTYV ARDEEDASSS SLALLVQQLQ KEQEANTIIA LSMTCASSPH IQCEEANDAI  420
GHIETSTQPS TLAGVEPAPS PSPSQRRAMT RMANDDQFET DDCYKGLGTL PEVYRYKYCD  480
DFCLFDYNGS ITTDDDKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-461832953115B3 domain-containing transcription factor LEC2
6j9c_D4e-461832953115B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G049500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418460.10.0B3 domain-containing transcription factor LEC2
RefseqXP_020418461.10.0B3 domain-containing transcription factor LEC2
RefseqXP_020418462.10.0B3 domain-containing transcription factor LEC2
RefseqXP_020418463.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A251PFW60.0A0A251PFW6_PRUPE; Uncharacterized protein
STRINGXP_008225116.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-47B3 family protein