PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.4G049500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 499aa MW: 55259.8 Da PI: 4.8765 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.9e-18 | 193 | 287 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l++sdv+++gr+vlpkk aee+ +++ +e+++l+++d s ++W +k++y ++ks++y+l+ ++ +Fvk+++L++gD + + + Prupe.4G049500.1.p 193 FKKELKNSDVGSLGRIVLPKKEAEENlpMLSDKEGIQLMIRDvYSDQEWGLKYKYwsNNKSRMYLLE-NTGDFVKQHKLEVGDCICLL--E 280 89**************************77777899******8888*******99855555556555.***************98877..3 PP SSEE..E CS B3 87 rsefelv 93 +++++l+ Prupe.4G049500.1.p 281 DEDKNLY 287 4666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-26 | 188 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-20 | 192 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.06E-21 | 192 | 289 | No hit | No description |
Pfam | PF02362 | 5.3E-14 | 193 | 288 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.109 | 193 | 294 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-17 | 193 | 292 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 499 aa Download sequence Send to blast |
MDNFHPPSIP STSTITSAPQ EQHSQLSICE PMSCSPSTTC SPSTTQYYCY PAQYLAPNPG 60 LQFQYAYPYQ QAGQPMYPFL VSGQPNVVVS TEQDSLARSG WTLDALVSKA ARKERRMARQ 120 RSLSLSRNNA NAAASSESSS PSSRRHAPFP WNEDDDQGSM STSSSGAGTD MQNINRHLYT 180 FCTPDNKKLR VMFKKELKNS DVGSLGRIVL PKKEAEENLP MLSDKEGIQL MIRDVYSDQE 240 WGLKYKYWSN NKSRMYLLEN TGDFVKQHKL EVGDCICLLE DEDKNLYIST ETRAGSIHAK 300 PPSRINNNNN NNNNTDRKAN NSNSNTTAEG NTPDSNPNYA DANTNTNAKS YSNNHNAPAD 360 IPIPLAYTYV ARDEEDASSS SLALLVQQLQ KEQEANTIIA LSMTCASSPH IQCEEANDAI 420 GHIETSTQPS TLAGVEPAPS PSPSQRRAMT RMANDDQFET DDCYKGLGTL PEVYRYKYCD 480 DFCLFDYNGS ITTDDDKS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 4e-46 | 183 | 295 | 3 | 115 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 4e-46 | 183 | 295 | 3 | 115 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00032 | PBM | Transfer from AT1G28300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.4G049500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418460.1 | 0.0 | B3 domain-containing transcription factor LEC2 | ||||
Refseq | XP_020418461.1 | 0.0 | B3 domain-containing transcription factor LEC2 | ||||
Refseq | XP_020418462.1 | 0.0 | B3 domain-containing transcription factor LEC2 | ||||
Refseq | XP_020418463.1 | 0.0 | B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | A0A251PFW6 | 0.0 | A0A251PFW6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225116.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12348 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28300.1 | 4e-47 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.4G049500.1.p |