PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G046600.1.p | ||||||||
Common Name | PRUPE_ppa013416mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LSD | ||||||||
Protein Properties | Length: 125aa MW: 13409.3 Da PI: 7.6625 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.3 | 4.6e-12 | 35 | 59 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL Y rGA++V+C++C+tV Prupe.4G046600.1.p 35 CGSCRRLLKYSRGARHVQCSCCQTV 59 ************************9 PP | |||||||
2 | zf-LSD1 | 41.1 | 3e-13 | 73 | 97 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+Y +GA+sVRC++C++V Prupe.4G046600.1.p 73 CGSCAVLLMYQYGASSVRCSSCQFV 97 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.4E-16 | 32 | 62 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-10 | 35 | 59 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.8E-12 | 70 | 98 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.3E-11 | 73 | 97 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MESTVEVDKG PVPEHQSIAA AQPPPSPSEI AQMVCGSCRR LLKYSRGARH VQCSCCQTVN 60 FVLEADQVGQ VKCGSCAVLL MYQYGASSVR CSSCQFVTEI GEHNKRPPWS VQQGQPPPPA 120 NPVH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G046600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007212238.1 | 9e-87 | protein LOL2 | ||||
Swissprot | O65426 | 1e-42 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | M5WI02 | 2e-85 | M5WI02_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13437 | 4e-86 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-41 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G046600.1.p |
Entrez Gene | 18778137 |