PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G046600.1.p
Common NamePRUPE_ppa013416mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LSD
Protein Properties Length: 125aa    MW: 13409.3 Da    PI: 7.6625
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G046600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.34.6e-123559125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        Cg+Cr lL Y rGA++V+C++C+tV
  Prupe.4G046600.1.p 35 CGSCRRLLKYSRGARHVQCSCCQTV 59
                        ************************9 PP

2zf-LSD141.13e-137397125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        Cg+C +lL+Y +GA+sVRC++C++V
  Prupe.4G046600.1.p 73 CGSCAVLLMYQYGASSVRCSSCQFV 97
                        ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-163262IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-103559IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.8E-127098IPR005735Zinc finger, LSD1-type
PfamPF069435.3E-117397IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MESTVEVDKG PVPEHQSIAA AQPPPSPSEI AQMVCGSCRR LLKYSRGARH VQCSCCQTVN  60
FVLEADQVGQ VKCGSCAVLL MYQYGASSVR CSSCQFVTEI GEHNKRPPWS VQQGQPPPPA  120
NPVH*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G046600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212238.19e-87protein LOL2
SwissprotO654261e-42LOL2_ARATH; Protein LOL2
TrEMBLM5WI022e-85M5WI02_PRUPE; Uncharacterized protein
STRINGEMJ134374e-86(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-41lsd one like 2