PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G046000.1.p | ||||||||
Common Name | PRUPE_ppa011804mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 197aa MW: 22364.5 Da PI: 8.7243 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 97.3 | 1.6e-30 | 19 | 117 | 2 | 102 |
HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekkskskekiweFkhks 85 Fl+k+y++le ++ k+++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+Y gFkk++ ++ weFkh+ Prupe.4G046000.1.p 19 FLSKTYDLLEegaaeeGDSGKKIVSWNAEGSGFVVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYqGFKKTSPRQ---------WEFKHER 100 9*********66555444899********************************************8899999887.........******* PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F+kg +++l +i rkk Prupe.4G046000.1.p 101 FQKGCRHMLVEITRKKC 117 **************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-32 | 10 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-39 | 15 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.14E-24 | 15 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.6E-27 | 19 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.9E-8 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.9E-8 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.9E-8 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAATTSSGQS PRTRSPAPFL SKTYDLLEEG AAEEGDSGKK IVSWNAEGSG FVVWSPAEFS 60 ELLLPKYFKH NNFSSFIRQL NTYQGFKKTS PRQWEFKHER FQKGCRHMLV EITRKKCEPS 120 AFPVYLKASE ESGSSNTAVA AAEENNCLLL MEENKNLRKQ KLELQMQISQ FKALEMKLLD 180 CLAQNMEDHQ KNKVRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 2e-14 | 16 | 115 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 2e-14 | 16 | 115 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 2e-14 | 16 | 115 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 2e-14 | 16 | 115 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 2e-14 | 16 | 115 | 3 | 105 | Heat shock factor protein 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G046000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007212104.1 | 1e-143 | heat stress transcription factor B-2a | ||||
TrEMBL | A0A251PJ22 | 1e-144 | A0A251PJ22_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13303 | 1e-142 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-37 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G046000.1.p |
Entrez Gene | 18779732 |