PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G042500.1.p

Common Name

PRUPE_ppa020903mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 279aa MW: 30732 Da PI: 8.7035

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G042500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.5	9.5e-36	42	100	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + + lkcprC+stntkfCyynny+ +qPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Prupe.4G042500.1.p 42 QPEPLKCPRCESTNTKFCYYNNYNKQQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRL 100 56889***********************************************9776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-23	43	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-31	45	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.149	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGLSTKQVSS DGLDWSQASL LQGQTFQLPK SPSAMRRQQQ QQPEPLKCPR CESTNTKFCY 60 YNNYNKQQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRL KKSSNSTSAS AAATTTTTNS 120 AAIDQTDHQQ QKPMSQVFYQ ALPQQNLDNT IIFSSSSSPG LSASTLPFLH QSGNLSFPFS 180 SSISTTSSSF DTNLSSISTS LQSSNVYNYA TVAAEDQFKA MEEPTITSIM PNISQPNWKV 240 PTSSNAMDVY SNDWNWEDIE TLVSTDLNLP WDGSDIKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G042500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007213508.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	M5WLN6	0.0	M5WLN6_PRUPE; Uncharacterized protein
STRING	EMJ14707	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	1e-27	Dof family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G042500.1.p
Entrez Gene	18778897