PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G036100.1.p
Common NamePRUPE_ppa001220mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 885aa    MW: 97246.4 Da    PI: 7.4423
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G036100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-18333432198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ + 
  Prupe.4G036100.1.p 333 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE- 421
                         89**************************555566778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Prupe.4G036100.1.p 422 PEGKLVMGFRK 432
                         77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-31330440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-20330432IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-22331432No hitNo description
PROSITE profilePS5086311.378333434IPR003340B3 DNA binding domain
PfamPF023624.4E-16333432IPR003340B3 DNA binding domain
SMARTSM010194.8E-21333434IPR003340B3 DNA binding domain
PROSITE profilePS5105014.317561611IPR011124Zinc finger, CW-type
PfamPF074963.0E-12566608IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MSSSSSKVCY NSECKELKSE HPRKGWRLRT GEYAELCDRC YLAYEEGRFC ETFHMNAAGW  60
RCCESCGKRV HCGCIVSSHA FTLLDPGGVE CMTCARKNFV LTPNPAWPTS MFFHSPLSER  120
LKDLSVKNWT HLAGSGPVPW RQAPSLFNSS IPSSELHTRV PYEVDVSTGI NKLNASERIF  180
VSSMEKKKVE DFSERLMKVN LTMGTQESLE NGKPGNNREE QSSSCLNISQ QSASLKEDPS  240
TPQFGPYGSV SETNAQVGVT GTNLRPTLPL AKQFNGNLQN GVESSADTQI RNARPRADAR  300
GRNQLLPRYW PRFTDQELQQ ISGDKNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP  360
PISQPEGLPL KVQDSKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRL  420
EPEGKLVMGF RKASTAPPSD QENETNKASN GVSALADAEL ADPSSWSKVD KSGYIAKEAL  480
GSKSLISRKR KNSTLGSKSK RLRIENEDLI ELKLTWEEAQ GLLRAPANHI PTVVVIEGFE  540
FEEYEDAPIL GMPTIYATGS AGEKIQWAQC EDCFKWRKLP VNALLPSKWT CSDNSWDPER  600
SSCSAAQDLT TEQLEDLLPS HSTVTSKKMK AAKQDPDNIE ALEGLDTLAN LAILGEGESL  660
PASAQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCLTVKRRFR TLMMRREKKQ  720
SEKEAESTRK KQQQQQLVVI DKVDDDTPIC CNAGSSSPNQ KKEVLELSDD DLNRTKSSTP  780
PFKGQIDLNI QPEREEELSP GSDSGSMMKL LQDATERYLK QQRLSSSGGS ENSSGNRSQQ  840
VGGEAGGGEP LSNGVTLGSS NHDGGNDCPA TLSIKASASM TATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-653114362127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G036100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417351.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A251PF880.0A0A251PF88_PRUPE; Uncharacterized protein
STRINGXP_008224939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-163HSI2-like 1