PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G024800.1.p
Common NamePRUPE_ppa001875mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 751aa    MW: 82035.7 Da    PI: 6.2398
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G024800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-2071126156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Prupe.4G024800.1.p  71 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 126
                         789999***********************************************998 PP
2START221.13.5e-692634861206
                         HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
               START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                         ela +a++el+++a+a+ep+Wv          e++n+de+l++f+++ +      ++ea+r+s++v+m++++lve+l+d++ qW++ +   
  Prupe.4G024800.1.p 263 ELAVAAMEELIRMAQAGEPLWVPGDhnsshnhEILNEDEYLRTFPRGIGptplgLKSEASRESALVIMNHVNLVEILMDVN-QWSTVFCgi 352
                         57899*****************77677789****************999********************************.******999 PP

                         ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
               START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           +a+tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    + R++++pSg+li++++n
  Prupe.4G024800.1.p 353 vsRAMTLDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHVDGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPN 439
                         99*****************************************************************99....69**************** PP

                         CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         g+skv+wvehv++++r++h+++r+lv+sgla+gak+wvatl+rqce+
  Prupe.4G024800.1.p 440 GYSKVIWVEHVEVDDRSVHNIYRPLVNSGLAFGAKRWVATLDRQCER 486
                         *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2250126IPR009057Homeodomain-like
SuperFamilySSF466898.77E-2054129IPR009057Homeodomain-like
PROSITE profilePS5007116.95768128IPR001356Homeobox domain
SMARTSM003896.8E-1969132IPR001356Homeobox domain
CDDcd000866.00E-1970129No hitNo description
PfamPF000462.2E-1771126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PROSITE profilePS5084844.427254489IPR002913START domain
SuperFamilySSF559617.99E-35254488No hitNo description
CDDcd088753.56E-128258485No hitNo description
SMARTSM002341.8E-70263486IPR002913START domain
PfamPF018528.2E-58264486IPR002913START domain
Gene3DG3DSA:3.30.530.207.4E-6369486IPR023393START-like domain
SuperFamilySSF559618.93E-27506741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MYQPSMFENH HHILDHMTTS STHKASESTE VLGKSRLLDD DFETKSGTET TTDAPSGDEQ  60
DPNNTGPRPK RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN  120
KRTQMKAQQE RHENSILKSE NDKLRAENNR YKEALGNATC PNCGGPAALG EMSFDEQHLR  180
IENARLREEI DRISSIAAKY VGKPLASSFS SHIPPHVPSR SLDLGVGSFG AQSGFVGEMY  240
GSSSDLLRSV SVPTDADKPM IIELAVAAME ELIRMAQAGE PLWVPGDHNS SHNHEILNED  300
EYLRTFPRGI GPTPLGLKSE ASRESALVIM NHVNLVEILM DVNQWSTVFC GIVSRAMTLD  360
ILSTGVAGNY NGALQVMTAE FQVPSPLVPT RENYFVRYCK QHVDGTWAVV DVSLDNLRPS  420
PISRSRRRPS GCLIQELPNG YSKVIWVEHV EVDDRSVHNI YRPLVNSGLA FGAKRWVATL  480
DRQCERLASS MASNIPAGDL CVITSPEGRK SMLKLAQRMV MSFCTGVGAS TAHAWTTLSA  540
TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWIPVPPKRV FDFLRDENSR TEWDILSNGG  600
LVQEMAHIAN GRDPGNCVSL LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDIVAMNV  660
VLSGGDPDYV ALLPSGFAIL PDGPTGPAGG GGGGILDVGS GGSLLTVAFQ ILVDSVPTAK  720
LSLGSVATVN NLIKCTVERI RAAVTCEQNA *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G024800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214541.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLM5X9K70.0M5X9K7_PRUPE; Uncharacterized protein
STRINGEMJ157400.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]