PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G000800.4.p | ||||||||
Common Name | APL, PRUPE_ppa009148mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 267aa MW: 28914.7 Da PI: 6.7396 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 51.2 | 2.8e-16 | 20 | 50 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++AtPk+i+++m+vkgLtl h+kSHLQkYRl Prupe.4G000800.4.p 20 QEATPKAIMRTMNVKGLTLFHLKSHLQKYRL 50 68****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 19 | 51 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-6 | 19 | 52 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-10 | 20 | 51 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 2.6E-15 | 91 | 136 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MFPRLMQAPH EGIAGQEDMQ EATPKAIMRT MNVKGLTLFH LKSHLQKYRL GKQSGKEMGD 60 VSKDASYLLE SPGTGNSSPN LPTSDLNEGY EVKEALRAQM EVQSKLHVQV EAEKHLQIRQ 120 DAERRYMAML ERACKMLADQ FIGGSVTDTD SHKCHGLGNK NTKGPSLDPL GFYSLQSTDV 180 AAVHGPEEEV PTSIHTQRAD CSTESCLTSH ESPGGLTLEG SPGGGKKRML SLDSAAASLI 240 WGEAKVRTQE INVAAVNPHG IARYGM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.20644 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G000800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893405 | 0.0 | KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211678.1 | 0.0 | protein PHR1-LIKE 3 isoform X3 | ||||
TrEMBL | A0A251PDI4 | 0.0 | A0A251PDI4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12877 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G000800.4.p |
Entrez Gene | 18778460 |