PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G000800.3.p | ||||||||
Common Name | APL, PRUPE_ppa009148mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 27552.2 Da PI: 7.3071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 50.2 | 5.7e-16 | 9 | 38 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk+i+++m+vkgLtl h+kSHLQkYRl Prupe.4G000800.3.p 9 EATPKAIMRTMNVKGLTLFHLKSHLQKYRL 38 69***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-14 | 8 | 39 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-10 | 9 | 39 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 6.63E-6 | 9 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.5E-15 | 79 | 124 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MRACILFAEA TPKAIMRTMN VKGLTLFHLK SHLQKYRLGK QSGKEMGDVS KDASYLLESP 60 GTGNSSPNLP TSDLNEGYEV KEALRAQMEV QSKLHVQVEA EKHLQIRQDA ERRYMAMLER 120 ACKMLADQFI GGSVTDTDSH KCHGLGNKNT KGPSLDPLGF YSLQSTDVAA VHGPEEEVPT 180 SIHTQRADCS TESCLTSHES PGGLTLEGSP GGGKKRMLSL DSAAASLIWG EAKVRTQEIN 240 VAAVNPHGIA RYGM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.20644 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G000800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893405 | 0.0 | KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417260.1 | 0.0 | protein PHR1-LIKE 2 isoform X1 | ||||
TrEMBL | A0A251PDI3 | 0.0 | A0A251PDI3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12877 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 1e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G000800.3.p |
Entrez Gene | 18778460 |