PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G000800.2.p

Common Name

APL, PRUPE_ppa009148mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 292aa MW: 31736.9 Da PI: 7.1788

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G000800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGGs kAtPk+i+++m+vkgLtl h+kSHLQkYRl Prupe.4G000800.2.p 35 KPRLRWTADLHERFVDAVTQLGGSSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-32	32	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.015	32	92	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-23	35	89	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.33E-16	35	89	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-7	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-15	116	161	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MFPRLMQAPH EGIAGQEDMQ GHRGDPCLVL TSDPKPRLRW TADLHERFVD AVTQLGGSSK 60 ATPKAIMRTM NVKGLTLFHL KSHLQKYRLA SYLLESPGTG NSSPNLPTSD LNEGYEVKEA 120 LRAQMEVQSK LHVQVEAEKH LQIRQDAERR YMAMLERACK MLADQFIGGS VTDTDSHKCH 180 GLGNKNTKGP SLDPLGFYSL QSTDVAAVHG PEEEVPTSIH TQRADCSTES CLTSHESPGG 240 LTLEGSPGGG KKRMLSLDSA AASLIWGEAK VRTQEINVAA VNPHGIARYG M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	35	92	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	35	92	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	35	92	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	35	92	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	35	92	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.20644	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G000800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT893405	0.0	KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224660.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X2
TrEMBL	A0A251PDJ0	0.0	A0A251PDJ0_PRUPE; Uncharacterized protein
STRING	EMJ12877	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-57	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G000800.2.p
Entrez Gene	18778460