PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G000800.1.p

Common Name

APL, PRUPE_ppa009148mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 306aa MW: 33184.5 Da PI: 7.1791

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G000800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.3e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGGs kAtPk+i+++m+vkgLtl h+kSHLQkYRl Prupe.4G000800.1.p 35 KPRLRWTADLHERFVDAVTQLGGSSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.499	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-32	32	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.68E-16	35	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-15	130	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MFPRLMQAPH EGIAGQEDMQ GHRGDPCLVL TSDPKPRLRW TADLHERFVD AVTQLGGSSK 60 ATPKAIMRTM NVKGLTLFHL KSHLQKYRLG KQSGKEMGDV SKDASYLLES PGTGNSSPNL 120 PTSDLNEGYE VKEALRAQME VQSKLHVQVE AEKHLQIRQD AERRYMAMLE RACKMLADQF 180 IGGSVTDTDS HKCHGLGNKN TKGPSLDPLG FYSLQSTDVA AVHGPEEEVP TSIHTQRADC 240 STESCLTSHE SPGGLTLEGS PGGGKKRMLS LDSAAASLIW GEAKVRTQEI NVAAVNPHGI 300 ARYGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.20644	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G000800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT893405	0.0	KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211678.1	0.0	protein PHR1-LIKE 3 isoform X3
Swissprot	Q94A57	2e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	M5WGF6	0.0	M5WGF6_PRUPE; Myb family transcription factor APL
STRING	EMJ12877	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G000800.1.p
Entrez Gene	18778460

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]