PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G306000.1.p | ||||||||
Common Name | PRUPE_ppa020857mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 376aa MW: 42837.2 Da PI: 5.4928 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.7 | 1.5e-18 | 13 | 53 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+++ r+vtf kR+ng++KKA+EL +LCd++v+ i++ ++ Prupe.3G306000.1.p 13 IQDDKARKVTFRKRKNGLFKKAFELTTLCDVKVCTIVYEKK 53 8999*********************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-20 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.43E-22 | 2 | 82 | No hit | No description |
PROSITE profile | PS50066 | 17.661 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-19 | 5 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-10 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-19 | 13 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-10 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-10 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MGRRKTKLAL ELIQDDKARK VTFRKRKNGL FKKAFELTTL CDVKVCTIVY EKKSEGKLAP 60 PQTFPAKFEE VKEIIDKYKS NSSKIKKVQN LADFYATQTM QVKKEIVKLR TKSYEEKYPT 120 WDDRLNEYSL DQMQELLNNL EAKIQAAHKI HNMMMIDSKK PAIQDYIPPM ALVQSNLDPP 180 FLSMVDDQNP SNYGSMGMSE SGWDQFASAS TSWANNNIQY APSNVSDYKG TTSIWDYDLF 240 GIDAVPLQYG NMEEKPTFYN NNPMQPPYMH DPILSSAATT SQVEQQQLSV EHALDVPPIN 300 VAYDEPLSLS LQPSHTDCPV SAASFSFEYQ QFATSSQSES QSQSQSQSQS YVDDQVRMLY 360 DSMFQFKQNN VSTYK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G306000.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216884.2 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A251QB97 | 0.0 | A0A251QB97_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18083 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-19 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G306000.1.p |
Entrez Gene | 18783833 |