PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G299000.3.p
Common NamePRUPE_ppa026877mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 285aa    MW: 32419.2 Da    PI: 6.5079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G299000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Prupe.3G299000.3.p 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+ E+ ++++++  lG++ W++Ia++++ gRt++++k++w++
  Prupe.3G299000.3.p  67 RGAFTETEENQIIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.517961IPR017930Myb domain
SuperFamilySSF466892.35E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002496.5E-111461IPR001005SANT/Myb domain
CDDcd001671.31E-41661No hitNo description
PROSITE profilePS5129426.44662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565117IPR009057Homeodomain-like
SMARTSM007174.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.5E-1567110IPR001005SANT/Myb domain
CDDcd001672.56E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TETEENQIIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKHHG  120
VDPLTHKPIE HKENIAEKKQ TITREDSSSS ISQGQEESQD SGLEAKLQQD GNGNKGFPEF  180
NDKLQNVPEL AGFDETNDLL KNYEMFCGSL DLGTFLLNQG TNTNNTSTSN SYSTSSFSVE  240
ESNNPSISIG ESIQEHSLQK WVDSVDSMLS WDGFNNLEQD LFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G299000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347373e-46KM034737.1 Jatropha curcas clone JcMYB118 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217823.10.0myb-related protein 315
TrEMBLM5WZ010.0M5WZ01_PRUPE; Uncharacterized protein
STRINGEMJ190220.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-82myb domain protein 40