PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.3G287600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 321aa MW: 36049.2 Da PI: 7.2365 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 254 | 300 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v+++G + W+ Ia+++ gR +kqc++rw+++l Prupe.3G287600.1.p 254 KGQWTPQEDRLLVQLVERFGIKKWSQIAKMLS-GRVGKQCRERWHNHL 300 799*****************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 248 | 306 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-19 | 249 | 306 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.901 | 249 | 304 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 253 | 302 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 254 | 300 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.11E-16 | 257 | 300 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1904095 | Biological Process | negative regulation of endosperm development | ||||
GO:2000692 | Biological Process | negative regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MELETNLKEL DNFPFLSSVF SDSSTPMKLK PEHPSNTNNG INSLHPQLSS SSSSPPPNCK 60 PLFSSLVPHF DPHHQHLHLH HHHHHQPLHG SHLNLNSHSH DDFKTSSDHI NHFSTIEGSS 120 SNPFSGIYYN TNPHDFVAVP LAPDGIAFHG ARGSYWGAHH HHHLDAQEIP DGQAQMGPQS 180 CIQLPPLINF GDFGSSSPMA ISLPSDEVTC NSSSSTEIEF CKRLSAVDQK KTKRLCMRRP 240 TSSKVLQKKP SIFKGQWTPQ EDRLLVQLVE RFGIKKWSQI AKMLSGRVGK QCRERWHNHL 300 RPDIRSIEEN ERENGSDDEI * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-19 | 252 | 314 | 2 | 64 | C-Myb DNA-Binding Domain |
1msf_C | 5e-19 | 252 | 314 | 2 | 64 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.3G287600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216299.2 | 0.0 | transcription factor MYB98 | ||||
TrEMBL | A0A251Q753 | 0.0 | A0A251Q753_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230943.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17095 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-33 | myb domain protein 98 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.3G287600.1.p |