PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G273200.1.p | ||||||||
Common Name | PRUPE_ppa023282mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 308aa MW: 34334.7 Da PI: 6.496 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 5.9e-39 | 24 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rr+CakdC+l+p+fpa+qpk f+n+h+l+G+sn++k+ k++++e++++am+s++ye+++ra+ Pv G++g+i++l+ ql+q+ Prupe.3G273200.1.p 24 ACAACKYQRRRCAKDCPLSPHFPADQPKMFQNAHRLYGVSNIMKIRKQVHPEQQNEAMRSIIYESNMRAKFPVTGCMGIINQLNFQLQQAI 114 7****************************************************************************************** PP DUF260 92 aelallkee 100 +el +++++ Prupe.3G273200.1.p 115 EELRYVRTH 123 ***999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.971 | 23 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-36 | 24 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MIIKTIDECT FYPTMTIKGG TSQACAACKY QRRRCAKDCP LSPHFPADQP KMFQNAHRLY 60 GVSNIMKIRK QVHPEQQNEA MRSIIYESNM RAKFPVTGCM GIINQLNFQL QQAIEELRYV 120 RTHLVICKDQ CQYRIPPSPP HYSSCPSSQL QLGMPSNNDA SAALTIYQHQ YQYASAGGGA 180 AGMSFVANEY LANGLSAVYI DDNDVVKPLR VQHPYYSDNN VDQLMAVQSN LVSSQAFPIH 240 QEMDVPHDYD DIPFDTIADD RQSYIESKDA CESSAESSFK GTTQSIEHVS QNDLKSAAAC 300 FSLTSVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-24 | 20 | 125 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-24 | 20 | 125 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G273200.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216458.2 | 0.0 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A251Q675 | 0.0 | A0A251Q675_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17657 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-42 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G273200.1.p |
Entrez Gene | 18783967 |